RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB64798" and tax_phylum = "Gastrotricha"

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tax_superkingdom 1

tax_phylum 1

  • Gastrotricha · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB64798 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24352496 24352496 PRJEB64798_P_NODE_122960_length_204_cov_4.470968_g121194_i0 PRJEB64798 122960 204 4.470968 9.12077472 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 106 1.23e-26   NR YP_009136576.1 1194616 g121194 i0 88.9 0.794117647058823 54 6 79.4 0 195 34 76 129 YP_009136576.1 cytochrome c oxidase subunit 2 [Lepidodermella squamata] diamond 162 106 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata
27760606 27760606 PRJEB64798_P_NODE_159984_length_183_cov_6.432836_g158218_i0 PRJEB64798 159984 183 6.432836 11.77208988 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 48.1 1.66e-4   NR YP_009136576.1 1194616 g158218 i0 75.8 0.540983606557377 33 8 54.1 0 5 103 19 51 YP_009136576.1 cytochrome c oxidase subunit 2 [Lepidodermella squamata] diamond 99 48.1 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata
29876003 29876003 PRJEB64798_P_NODE_68471_length_234_cov_4.037838_g66706_i0 PRJEB64798 68471 234 4.037838 9.44854092 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 71.2 2.89e-12   NR YP_009136580.1 1194616 g66706 i0 80 0.641025641025641 50 10 64.1 0 3 152 443 492 YP_009136580.1 cytochrome c oxidase subunit 1 [Lepidodermella squamata] diamond 150 71.2 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;