RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB64798" and tax_phylum = "Candidatus Uhriibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Uhriibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB64798 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30437849 30437849 PRJEB64798_P_NODE_117213_length_208_cov_2.597484_g115447_i0 PRJEB64798 117213 208 2.597484 5.40276672 Bacteria 2 Bacteria Bacteria 64.7 4.27e-10   NR KKW28948.1 1618989 g115447 i0 87.5 3.69230769230769 32 4 46.2 0 113 208 42 73 KKW28948.1 MAG: alanyl-tRNA synthetase [Candidatus Uhrbacteria bacterium GW2011_GWD2_52_7] diamond 768 65.1 0.993855606758833 Bacteria Bacteria candidate phyla   Candidatus Uhriibacteriota         Candidatus Uhrbacteria bacterium GW2011_GWD2_52_7
30507660 30507660 PRJEB64798_P_NODE_127893_length_199_cov_5.320000_g126127_i0 PRJEB64798 127893 199 5.32 10.5868 Candidatus Uhrbacteria bacterium 2053634 Bacteria Bacteria 48.1 9.76e-5   NR MFH1252790.1 2053634 g126127 i0 50 1.04020100502513 34 17 51.3 0 1 102 78 111 MFH1252790.1 NUDIX domain-containing protein [Candidatus Uhrbacteria bacterium] diamond 207 48.1 1 Bacteria Bacteria candidate phyla   Candidatus Uhriibacteriota         Candidatus Uhrbacteria bacterium
32657270 32657270 PRJEB64798_P_NODE_227300_length_160_cov_2.036036_g225534_i0 PRJEB64798 227300 160 2.036036 3.2576576 Candidatus Uhrbacteria bacterium 2053634 Bacteria Bacteria 52.4 4.37e-7   NR MEI7512618.1 2053634 g225534 i0 48.8 1.5375 41 21 76.9 0 2 124 2 42 MEI7512618.1 RNA-binding protein [Candidatus Uhrbacteria bacterium] diamond 246 52.4 1 Bacteria Bacteria candidate phyla   Candidatus Uhriibacteriota         Candidatus Uhrbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;