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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB64798" and tax_phylum = "Candidatus Shapironibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Shapironibacteriota · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB64798 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26653652 26653652 PRJEB64798_P_NODE_241821_length_154_cov_7.942857_g240055_i0 PRJEB64798 241821 154 7.942857 12.23199978 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 71.2 1.82e-14   NR MDD4106508.1 2053613 g240055 i0 69.4 0.954545454545455 49 15 95.5 0 148 2 28 76 MDD4106508.1 50S ribosomal protein L23 [Candidatus Shapirobacteria bacterium] diamond 147 71.2 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium
27413297 27413297 PRJEB64798_P_NODE_225183_length_160_cov_9.333333_g223417_i0 PRJEB64798 225183 160 9.333333 14.9333328 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 51.6 3.76e-6   NR MDD4938236.1 2053613 g223417 i0 45.7 0.8625 46 25 86.3 0 142 5 77 122 MDD4938236.1 hypothetical protein [Candidatus Shapirobacteria bacterium] diamond 138 51.6 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium
27886529 27886529 PRJEB64798_P_NODE_155265_length_186_cov_1.109489_g153499_i0 PRJEB64798 155265 186 1.109489 2.06364954 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 65.9 1.2e-10   NR MFA7301977.1 2053613 g153499 i0 51.7 2.90322580645161 60 25 96.8 1 185 6 355 410 MFA7301977.1 right-handed parallel beta-helix repeat-containing protein [Candidatus Shapirobacteria bacterium] diamond 540 65.9 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium
30318666 30318666 PRJEB64798_P_NODE_172592_length_177_cov_11.828125_g170826_i0 PRJEB64798 172592 177 11.828125 20.93578125 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 73.9 1.47e-13   NR MCX6726166.1 2053613 g170826 i0 52.6 0.966101694915254 57 27 96.6 0 175 5 329 385 MCX6726166.1 fibronectin type III domain-containing protein [Candidatus Shapirobacteria bacterium] diamond 171 73.9 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;