RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where analysis = "diamond", bioproject = "PRJEB64798" and tax_phylum = "Candidatus Raymondiibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Raymondiibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJEB64798 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29686032 29686032 PRJEB64798_P_NODE_220650_length_162_cov_1.690265_g218884_i0 PRJEB64798 220650 162 1.690265 2.7382293 Candidatus Raymondbacteria bacterium RifOxyA12_full_5 1817884 Bacteria Bacteria 59.3 1.6e-8   NR OGJ88290.1 1817884 g218884 i0 90.4 2.2962962962963 52 5 96.3 0 158 3 241 292 OGJ88290.1 MAG: hypothetical protein A2268_05250 [Candidatus Raymondbacteria bacterium RifOxyA12_full_50_37] diamond 372 59.3 1 Bacteria Bacteria candidate phyla   Candidatus Raymondiibacteriota         Candidatus Raymondbacteria bacterium RifOxyA12_full_50_37

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;