RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB64798" and tax_phylum = "Candidatus Berkelbacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Berkelbacteria · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB64798 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31045047 31045047 PRJEB64798_P_NODE_100915_length_212_cov_2.920245_g99149_i0 PRJEB64798 100915 212 2.920245 6.1909194 Candidatus Berkelbacteria bacterium RIFOXYA2_FULL_43_1 2053521 Bacteria Bacteria 72.8 1.25e-13   NR OGD62003.1 1797472 g99149 i0 60 0.990566037735849 70 22 94.8 2 205 5 82 148 OGD62003.1 MAG: hypothetical protein A2215_04550 [Candidatus Berkelbacteria bacterium RIFOXYA2_FULL_43_10] diamond 210 72.8 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium RIFOXYA2_FULL_43_10
32468360 32468360 PRJEB64798_P_NODE_101719_length_212_cov_2.773006_g99953_i0 PRJEB64798 101719 212 2.773006 5.87877272 Candidatus Berkelbacteria bacterium RIFOXYA2_FULL_43_1 2053521 Bacteria Bacteria 81.6 3.21e-16   NR OGD63164.1 1797472 g99953 i0 52.4 1.16037735849057 82 24 94.8 1 210 10 85 166 OGD63164.1 MAG: rod shape-determining protein RodA [Candidatus Berkelbacteria bacterium RIFOXYA2_FULL_43_10] diamond 246 81.6 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium RIFOXYA2_FULL_43_10
32500165 32500165 PRJEB64798_P_NODE_81839_length_213_cov_18.981707_g80073_i0 PRJEB64798 81839 213 18.981707 40.43103591 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 50.1 5.51e-5   NR MCR4308198.1 2053521 g80073 i0 66.7 0.464788732394366 33 11 46.5 0 114 212 180 212 MCR4308198.1 hypothetical protein [Candidatus Berkelbacteria bacterium] diamond 99 50.1 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;