RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB6055" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6055 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30216268 30216268 PRJEB6055_S_NODE_832_length_293_cov_1.860465_g808_i0 PRJEB6055 832 293 1.860465 5.45116245 Mollusca 6447 Mollusca Mollusca 97.1 4.36e-22   NR XP_050391847.1 6465 g808 i0 64.5 8.31399317406143 62 22 63.5 0 292 107 196 257 XP_050391847.1 40S ribosomal protein S4 [Patella vulgata] diamond 2436 97.8 0.992842535787321 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
30855069 30855069 PRJEB6055_S_NODE_2874_length_194_cov_1.509434_g2850_i0 PRJEB6055 2874 194 1.509434 2.92830196 Argopecten irradians 31199 Mollusca Mollusca 53.9 6.55e-7   NR XP_069123020.1 31199 g2850 i0 70.5 3.44845360824742 44 13 68 0 15 146 114 157 XP_069123020.1 small ribosomal subunit protein eS24-like isoform X2 [Argopecten irradians] diamond 669 53.9 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
32056689 32056689 PRJEB6055_S_NODE_1538_length_237_cov_2.856436_g1514_i0 PRJEB6055 1538 237 2.856436 6.76975332 Octopus sinensis 2607531 Mollusca Mollusca 98.2 2.48e-22   NR XP_029635157.1 2607531 g1514 i0 75 1.9873417721519 52 13 65.8 0 2 157 284 335 XP_029635157.1 cathepsin B [Octopus sinensis] diamond 471 98.2 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus sinensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;