RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB6055" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6055 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27026758 27026758 PRJEB6055_S_NODE_662_length_312_cov_4.191336_g638_i0 PRJEB6055 662 312 4.191336 13.07696832 Eukaryota 2759 Plants Plants 80.1 1.61e-15   NR KAJ9529013.1 44745 g638 i0 50.6 3.15384615384615 83 41 79.8 0 281 33 171 253 KAJ9529013.1 hypothetical protein QJQ45_007086 [Haematococcus lacustris] diamond 984 80.9 0.990111248454882 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
31360955 31360955 PRJEB6055_S_NODE_2876_length_194_cov_1.138365_g2852_i0 PRJEB6055 2876 194 1.138365 2.2084281 Volvox carteri f. nagariensis 3068 Plants Plants 43.1 0.0144   NR XP_002951961.1 3068 g2852 i0 48.9 1.00515463917526 45 19 69.6 1 4 138 598 638 XP_002951961.1 cysteine protease [Volvox carteri f. nagariensis] diamond 195 43.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
31575542 31575542 PRJEB6055_S_NODE_2256_length_210_cov_2.451429_g2232_i0 PRJEB6055 2256 210 2.451429 5.1480009 Eukaryota 2759 Plants Plants 87 1.58e-19   NR CAD7696009.1 121088 g2232 i0 76.5 11.6571428571429 51 12 72.9 0 1 153 121 171 CAD7696009.1 unnamed protein product [Ostreobium quekettii] diamond 2448 87.8 0.990888382687927 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;