RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJEB6055" and tax_kingdom = "Viridiplantae"

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tax_phylum 2

tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Viridiplantae · 7 ✖

bioproject 1

  • PRJEB6055 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27026758 27026758 PRJEB6055_S_NODE_662_length_312_cov_4.191336_g638_i0 PRJEB6055 662 312 4.191336 13.07696832 Eukaryota 2759 Plants Plants 80.1 1.61e-15   NR KAJ9529013.1 44745 g638 i0 50.6 3.15384615384615 83 41 79.8 0 281 33 171 253 KAJ9529013.1 hypothetical protein QJQ45_007086 [Haematococcus lacustris] diamond 984 80.9 0.990111248454882 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
28991914 28991914 PRJEB6055_S_NODE_5748_length_152_cov_1.914530_g5724_i0 PRJEB6055 5748 152 1.91453 2.9100856 Carpinus fangiana 176857 Plants Plants 61.6 1.7e-10   NR KAE8124078.1 176857 g5724 i0 91.9 0.730263157894737 37 3 73 0 16 126 1 37 KAE8124078.1 hypothetical protein FH972_018988 [Carpinus fangiana] diamond 111 61.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Carpinus Carpinus fangiana
29363799 29363799 PRJEB6055_S_NODE_649_length_314_cov_2.071685_g625_i0 PRJEB6055 649 314 2.071685 6.5050909 Eukaryota 2759 Plants Plants 53.1 4.45e-6   NR XP_055818756.1 45834 g625 i0 66.7 7.80573248407643 81 25 77.4 1 289 47 69 147 XP_055818756.1 60S acidic ribosomal protein P2B-like [Solanum dulcamara] diamond 2451 53.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum dulcamara
29844076 29844076 PRJEB6055_S_NODE_2911_length_193_cov_2.398734_g2887_i0 PRJEB6055 2911 193 2.398734 4.62955662 Sphenostylis stenocarpa 92480 Plants Plants 74.7 9.92e-14   NR CAJ1971540.1 92480 g2887 i0 65.5 4.29015544041451 55 19 85.5 0 193 29 400 454 CAJ1971540.1 unnamed protein product [Sphenostylis stenocarpa] diamond 828 74.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Sphenostylis Sphenostylis stenocarpa
29907408 29907408 PRJEB6055_S_NODE_731_length_304_cov_3.758364_g707_i0 PRJEB6055 731 304 3.758364 11.42542656 Rhamnella rubrinervis 2594499 Plants Plants 49.7 2.64e-4   NR KAF3449793.1 2594499 g707 i0 41.4 0.690789473684211 70 28 69.1 3 94 303 301 357 KAF3449793.1 hypothetical protein FNV43_RR05871 [Rhamnella rubrinervis] diamond 210 49.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rhamnaceae Rhamnella Rhamnella rubrinervis
31360955 31360955 PRJEB6055_S_NODE_2876_length_194_cov_1.138365_g2852_i0 PRJEB6055 2876 194 1.138365 2.2084281 Volvox carteri f. nagariensis 3068 Plants Plants 43.1 0.0144   NR XP_002951961.1 3068 g2852 i0 48.9 1.00515463917526 45 19 69.6 1 4 138 598 638 XP_002951961.1 cysteine protease [Volvox carteri f. nagariensis] diamond 195 43.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
31575542 31575542 PRJEB6055_S_NODE_2256_length_210_cov_2.451429_g2232_i0 PRJEB6055 2256 210 2.451429 5.1480009 Eukaryota 2759 Plants Plants 87 1.58e-19   NR CAD7696009.1 121088 g2232 i0 76.5 11.6571428571429 51 12 72.9 0 1 153 121 171 CAD7696009.1 unnamed protein product [Ostreobium quekettii] diamond 2448 87.8 0.990888382687927 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;