RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB6055" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJEB6055 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16702236 16702236 PRJEB6055_S_NODE_994_length_276_cov_14951.746888_g970_i0 PRJEB6055 994 276 14951.746888 41266.82141088 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 84.7 1.91e-18   NR CCI43029.1 65357 g970 i0 58.7 7.76086956521739 63 26 68.5 0 255 67 1 63 CCI43029.1 unnamed protein product [Albugo candida] diamond 2142 84.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
29464805 29464805 PRJEB6055_S_NODE_3110_length_189_cov_1.818182_g3086_i0 PRJEB6055 3110 189 1.818182 3.43636398 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 53.9 1.03e-6   NR CEP03344.1 37360 g3086 i0 69.7 1.84126984126984 33 10 52.4 0 4 102 158 190 CEP03344.1 hypothetical protein PBRA_003104 [Plasmodiophora brassicae] diamond 348 53.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31638550 31638550 PRJEB6055_S_NODE_1856_length_224_cov_2.465608_g1832_i0 PRJEB6055 1856 224 2.465608 5.52296192 root 1 Root_unresolved Root_unresolved 48.1 3.59e-4   NR TNV73783.1 5974 g1832 i0 36.5 1.79464285714286 63 40 84.4 0 219 31 151 213 TNV73783.1 hypothetical protein FGO68_gene10777 [Halteria grandinella] diamond 402 48.1 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
31986500 31986500 PRJEB6055_S_NODE_2258_length_210_cov_1.537143_g2234_i0 PRJEB6055 2258 210 1.537143 3.2280003 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 76.3 1.7e-15   NR XP_008610472.1 1156394 g2234 i0 74.4 2.47142857142857 43 11 61.4 0 3 131 107 149 XP_008610472.1 30S ribosomal protein S18e [Saprolegnia diclina VS20] diamond 519 76.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;