RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB6054" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB6054 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
33014256 33014256 PRJEB6054_S_NODE_7156_length_197_cov_1.234568_g7067_i0 PRJEB6054 7156 197 1.234568 2.43209896 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 69.3 8.77e-13   NR XP_024584955.1 4781 g7067 i0 53.1 3.91370558375635 64 30 97.5 0 195 4 81 144 XP_024584955.1 60s ribosomal protein [Plasmopara halstedii] diamond 771 69.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
33167701 33167701 PRJEB6054_S_NODE_3568_length_249_cov_6.719626_g3479_i0 PRJEB6054 3568 249 6.719626 16.73186874 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 84.7 2.28e-18   NR KAF0698646.1 120398 g3479 i0 54.9 0.987951807228916 82 36 98.8 1 248 3 63 143 KAF0698646.1 hypothetical protein As57867_010700 [Aphanomyces stellatus] diamond 246 84.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;