RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB6054" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB6054 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32940165 32940165 PRJEB6054_S_NODE_13185_length_160_cov_0.960000_g13096_i0 PRJEB6054 13185 160 0.96 1.536 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 42 0.0161   NR EPY35978.1 28005 g13096 i0 83.3 5.85 24 4 45 0 156 85 147 170 EPY35978.1 small subunit ribosomal protein S16e [Strigomonas culicis] diamond 936 42 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis
33031388 33031388 PRJEB6054_S_NODE_6740_length_201_cov_0.933735_g6651_i0 PRJEB6054 6740 201 0.933735 1.87680735 Angomonas deanei 59799 Euglenozoa other_Eukaryota 49.7 3.4e-5   NR EPY25395.1 59799 g6651 i0 52.1 0.716417910447761 48 23 71.6 0 201 58 114 161 EPY25395.1 nascent polypeptide-associated complex subunit alpha [Angomonas deanei] diamond 144 49.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Angomonas Angomonas deanei
33059628 33059628 PRJEB6054_S_NODE_15933_length_150_cov_1.539130_g15844_i0 PRJEB6054 15933 150 1.53913 2.308695 Leishmania 5658 Euglenozoa other_Eukaryota 47.4 1.3e-4   NR GET88997.1 5689 g15844 i0 71.4 3.88 28 8 56 0 148 65 142 169 GET88997.1 ige-dependent histamine-releasing factor, putative [Leishmania tarentolae] diamond 582 47.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania tarentolae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;