RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB6054" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB6054 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32911639 32911639 PRJEB6054_S_NODE_12969_length_161_cov_1.309524_g12880_i0 PRJEB6054 12969 161 1.309524 2.10833364 uncultured Clostridium sp. 59620 Bacteria Bacteria 98.6 3.29e-24   NR WP_297636592.1 59620 g12880 i0 88.7 1.97515527950311 53 6 98.8 0 2 160 57 109 WP_297636592.1 phage virion morphogenesis protein [uncultured Clostridium sp.] diamond 318 98.6 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium uncultured Clostridium sp.
32945964 32945964 PRJEB6054_S_NODE_11578_length_167_cov_3.795455_g11489_i0 PRJEB6054 11578 167 3.795455 6.33840985 uncultured Clostridium sp. 59620 Bacteria Bacteria 92 4.4599999999999996e-23   NR WP_297636655.1 59620 g11489 i0 93.9 0.880239520958084 49 3 88 0 165 19 10 58 WP_297636655.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein [uncultured Clostridium sp.] diamond 147 92 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium uncultured Clostridium sp.
32974477 32974477 PRJEB6054_S_NODE_11298_length_169_cov_1.641791_g11209_i0 PRJEB6054 11298 169 1.641791 2.77462679 root 1 Root_unresolved Root_unresolved 75.5 1.22e-15   NR MRB67472.1 1428 g11209 i0 70 21.5147928994083 50 15 88.8 0 169 20 85 134 MRB67472.1 hypothetical protein [Bacillus thuringiensis] diamond 3636 75.9 0.994729907773386 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis
33008467 33008467 PRJEB6054_S_NODE_7587_length_193_cov_1.968354_g7498_i0 PRJEB6054 7587 193 1.968354 3.79892322 Bacteria 2 Bacteria Bacteria 101 1.84e-26   NR MCB2621775.1 1639 g7498 i0 94.1 18.2331606217617 51 3 79.3 0 193 41 15 65 MCB2621775.1 fumarate hydratase [Listeria monocytogenes] diamond 3519 102 0.990196078431373 Bacteria   Bacillati Bacillota Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;