RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB6054" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB6054 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32945979 32945979 PRJEB6054_S_NODE_13578_length_158_cov_1.243902_g13489_i0 PRJEB6054 13578 158 1.243902 1.96536516 Spongiactinospora sp. TRM9 2871673 Bacteria Bacteria 62.8 9.79e-10   NR WP_277307989.1 3031114 g13489 i0 62.7 0.968354430379747 51 19 96.8 0 153 1 95 145 WP_277307989.1 M20 metallopeptidase family protein [Spongiactinospora sp. TRM90649] diamond 153 62.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Spongiactinospora Spongiactinospora sp. TRM90649
33116574 33116574 PRJEB6054_S_NODE_7159_length_197_cov_1.234568_g7070_i0 PRJEB6054 7159 197 1.234568 2.43209896 unclassified Streptomyces 2593676 Bacteria Bacteria 42.7 0.0202   NR WP_398017753.1 2593676 g7070 i0 45.7 0.700507614213198 46 22 70.1 1 178 41 132 174 WP_398017753.1 MULTISPECIES: IS110 family transposase [unclassified Streptomyces] diamond 138 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;