RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJEB6054" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJEB6054 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32911624 32911624 PRJEB6054_S_NODE_10745_length_172_cov_2.905109_g10656_i0 PRJEB6054 10745 172 2.905109 4.99678748 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 44.3 5.28e-4   NR MBX7169366.1 2283092 g10656 i0 62.9 1.30813953488372 35 13 61 0 45 149 1 35 MBX7169366.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 225 44.3 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
32911629 32911629 PRJEB6054_S_NODE_11473_length_168_cov_1.203008_g11384_i0 PRJEB6054 11473 168 1.203008 2.02105344 Acidobacteriaceae bacterium 2052142 Bacteria Bacteria 42.7 0.0138   NR MDR3737318.1 2052142 g11384 i0 44.2 0.767857142857143 43 24 76.8 0 165 37 270 312 MDR3737318.1 hypothetical protein [Acidobacteriaceae bacterium] diamond 129 42.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium
33008465 33008465 PRJEB6054_S_NODE_6811_length_200_cov_3.660606_g6722_i0 PRJEB6054 6811 200 3.660606 7.321212 Bacteria 2 Bacteria Bacteria 46.6 1.04e-4   NR MBA4123663.1 1978231 g6722 i0 78.1 0.96 32 7 48 0 98 3 1 32 MBA4123663.1 hypothetical protein [Acidobacteriota bacterium] diamond 192 46.6 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
33048314 33048314 PRJEB6054_S_NODE_8829_length_183_cov_2.054054_g8740_i0 PRJEB6054 8829 183 2.054054 3.75891882 Acidobacteriota bacterium 1978231 Bacteria Bacteria 49.3 3.62e-5   NR MBL8167295.1 1978231 g8740 i0 69.8 0.704918032786885 43 10 65.6 1 62 181 78 120 MBL8167295.1 hypothetical protein [Acidobacteriota bacterium] diamond 129 49.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
33116535 33116535 PRJEB6054_S_NODE_11647_length_167_cov_1.128788_g11558_i0 PRJEB6054 11647 167 1.128788 1.88507596 Holophagales bacterium 2478486 Bacteria Bacteria 43.1 0.00264   NR MDR2697879.1 2478486 g11558 i0 43.4 0.952095808383233 53 28 93.4 2 160 5 40 91 MDR2697879.1 hypothetical protein [Holophagales bacterium] diamond 159 43.1 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales     Holophagales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;