RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB6054" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB6054 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26475745 26475745 PRJEB6054_S_NODE_4584_length_231_cov_2440.795918_g4495_i0 PRJEB6054 4584 231 2440.795918 5638.23857058 Dictyostelium purpureum 5786 Evosea other_Eukaryota 73.9 1.5700000000000001e-13   NR XP_003287614.1 5786 g4495 i0 66.7 1.64935064935065 60 15 77.9 1 230 51 235 289 XP_003287614.1 calcium-regulated actin-bundling protein [Dictyostelium purpureum] diamond 381 73.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
33048242 33048242 PRJEB6054_S_NODE_11117_length_170_cov_2.037037_g11028_i0 PRJEB6054 11117 170 2.037037 3.4629629 Dictyostelium purpureum 5786 Evosea other_Eukaryota 45.1 8.38e-4   NR XP_003290517.1 5786 g11028 i0 61.1 0.635294117647059 36 14 63.5 0 167 60 98 133 XP_003290517.1 uncharacterized protein DICPUDRAFT_37459, partial [Dictyostelium purpureum] diamond 108 45.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
33167676 33167676 PRJEB6054_S_NODE_13168_length_160_cov_1.280000_g13079_i0 PRJEB6054 13168 160 1.28 2.048 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 48.1 1.08e-4   NR KAH3763480.1 1580589 g13079 i0 68.6 0.65625 35 11 65.6 0 160 56 152 186 KAH3763480.1 Rho GTPase [Pelomyxa schiedti] diamond 105 48.1 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;