RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJEB58983" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJEB58983 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
125041 125041 PRJEB58983_P_NODE_32221_length_242_cov_2.106509_g31806_i0 PRJEB58983 32221 242 2.106509 5.09775178 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 142 3.25e-41   NR GJM17675.1 2202153 g31806 i0 87.3 2.96280991735537 79 10 97.9 0 242 6 77 155 GJM17675.1 MAG: hypothetical protein DHS20C13_30020 [Thermodesulfobacteriota bacterium] diamond 717 142 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
12878607 12878607 PRJEB58983_P_NODE_28171_length_252_cov_1.681564_g27756_i0 PRJEB58983 28171 252 1.681564 4.23754128 Candidatus Dadabacteria bacterium 2080303 Bacteria Bacteria 138 3.55e-38   NR RMF17518.1 2080303 g27756 i0 77.1 7.80952380952381 83 18 98.8 1 252 4 104 185 RMF17518.1 MAG: adenosylhomocysteinase, partial [Candidatus Dadabacteria bacterium] diamond 1968 138 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium
28006216 28006216 PRJEB58983_P_NODE_25345_length_263_cov_2.557895_g24930_i0 PRJEB58983 25345 263 2.557895 6.72726385 Pseudomonadati 3379134 Bacteria Bacteria 78.2 9.31e-15   NR WP_028573666.1 53245 g24930 i0 95 7.75665399239544 40 2 45.6 0 144 263 1 40 WP_028573666.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) [Desulfonatronovibrio hydrogenovorans] diamond 2040 78.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfonatronovibrionaceae Desulfonatronovibrio Desulfonatronovibrio hydrogenovorans
28896709 28896709 PRJEB58983_P_NODE_10288_length_390_cov_2.082019_g9873_i0 PRJEB58983 10288 390 2.082019 8.1198741 Geomonas fuzhouensis 2847989 Bacteria Bacteria 168 5.999999999999999e-49   NR WP_224957445.1 2873701 g9873 i0 62 3.92307692307692 129 49 99.2 0 4 390 90 218 WP_224957445.1 branched-chain amino acid transaminase [Geomonas fuzhouensis] diamond 1530 168 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas fuzhouensis
29048070 29048070 PRJEB58983_P_NODE_23988_length_270_cov_0.923858_g23573_i0 PRJEB58983 23988 270 0.923858 2.4944166 Desulfovibrio 872 Bacteria Bacteria 75.9 1.79e-14   NR NMC49336.1 885 g23573 i0 54.1 3.38888888888889 61 28 67.8 0 80 262 1 61 NMC49336.1 nickel pincer cofactor biosynthesis protein LarB [Desulfovibrio sp.] diamond 915 76.3 0.99475753604194 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
31170789 31170789 PRJEB58983_P_NODE_14335_length_336_cov_1.942966_g13920_i0 PRJEB58983 14335 336 1.942966 6.52836576 Syntrophales bacterium 2928017 Bacteria Bacteria 182 1.52e-51   NR MCU0530745.1 2928017 g13920 i0 82.9 1.98214285714286 111 18 98.2 1 334 5 78 188 MCU0530745.1 S8 family peptidase [Syntrophales bacterium] diamond 666 182 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium
31613796 31613796 PRJEB58983_P_NODE_27856_length_253_cov_1.316667_g27441_i0 PRJEB58983 27856 253 1.316667 3.33116751 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 83.6 9.85e-17   NR MEW6657415.1 2202153 g27441 i0 58.1 1.75494071146245 74 21 86.6 3 34 252 13 77 MEW6657415.1 toprim domain-containing protein [Thermodesulfobacteriota bacterium] diamond 444 83.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
31961718 31961718 PRJEB58983_P_NODE_4178_length_598_cov_6.356190_g3770_i0 PRJEB58983 4178 598 6.35619 38.0100162 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 155 2.9e-45   NR MCL1962067.1 2049043 g3770 i0 78.8 0.978260869565217 99 21 49.7 0 356 60 6 104 MCL1962067.1 putative addiction module antidote protein [Desulfovibrionaceae bacterium] diamond 585 155 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
32751883 32751883 PRJEB58983_P_NODE_1180_length_1182_cov_2.399459_g912_i0 PRJEB58983 1180 1182 2.399459 28.36160538 Desulfobacterales bacterium 2044940 Bacteria Bacteria 68.9 6.64e-9   NR MFO7686422.1 2044940 g912 i0 26 0.682741116751269 269 186 67.5 7 357 1154 23 281 MFO7686422.1 hypothetical protein [Desulfobacterales bacterium] diamond 807 68.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;