RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB58983" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB58983 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4820053 4820053 PRJEB58983_P_NODE_22184_length_278_cov_2.204878_g21769_i0 PRJEB58983 22184 278 2.204878 6.12956084 Bacteria 2 Bacteria Bacteria 124 5.2499999999999996e-31   NR TVR55516.1 1898206 g21769 i0 70 28.0035971223022 90 23 97.1 2 2 271 391 476 TVR55516.1 MAG: adenosylhomocysteinase [Spirochaetaceae bacterium] diamond 7785 125 0.992 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae   Spirochaetaceae bacterium
28921491 28921491 PRJEB58983_P_NODE_25928_length_261_cov_1.106383_g25513_i0 PRJEB58983 25928 261 1.106383 2.88765963 Bacteria 2 Bacteria Bacteria 43.5 0.0248   NR MBP7095020.1 2053615 g25513 i0 49.1 1.17241379310345 53 23 60.9 1 160 2 212 260 MBP7095020.1 cadherin-like beta sandwich domain-containing protein [Spirochaetia bacterium] diamond 306 43.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;