RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB58983" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB58983 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3950723 3950723 PRJEB58983_P_NODE_12184_length_361_cov_1.427083_g11769_i0 PRJEB58983 12184 361 1.427083 5.15176963 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 128 2.1799999999999997e-35   NR ADK26622.1 323453 g11769 i0 93.4 0.506925207756233 61 4 50.7 0 3 185 70 130 ADK26622.1 rps22a [Heteromita sp. PRA-74] diamond 183 128 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74
13745501 13745501 PRJEB58983_P_NODE_1511_length_1034_cov_3.782518_g1206_i0 PRJEB58983 1511 1034 3.782518 39.11123612 Cercozoa sp. DMV 1342330 SAR_Eukaryotes SAR_Eukaryotes 387 2.6099999999999998e-129   NR BAN37425.1 1342330 g1206 i0 70.9 3.68762088974855 254 74 73.7 0 7 768 188 441 BAN37425.1 elongation factor 1-alpha [Cercozoa sp. DMV] diamond 3813 387 1 Eukaryota Sar   Cercozoa         Cercozoa sp. DMV
15427233 15427233 PRJEB58983_P_NODE_21273_length_283_cov_1.461905_g20858_i0 PRJEB58983 21273 283 1.461905 4.13719115 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 175 1.83e-52   NR ADK26624.1 323453 g20858 i0 89.4 0.996466431095406 94 10 99.6 0 2 283 67 160 ADK26624.1 elongation factor 2, partial [Heteromita sp. PRA-74] diamond 282 175 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74
27886424 27886424 PRJEB58983_P_NODE_27185_length_255_cov_3.274725_g26770_i0 PRJEB58983 27185 255 3.274725 8.35054875 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 140 8.46e-41   NR ADK47156.1 323453 g26770 i0 94.3 0.823529411764706 70 4 82.4 0 210 1 1 70 ADK47156.1 ribosomal protein S23a [Heteromita sp. PRA-74] diamond 210 140 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;