RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB58983" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB58983 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27026755 27026755 PRJEB58983_P_NODE_24942_length_265_cov_2.255208_g24527_i0 PRJEB58983 24942 265 2.255208 5.9763012 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 152 3.6e-45   NR KAG7353658.1 303405 g24527 i0 82.1 7.65283018867925 84 15 95.1 0 1 252 82 165 KAG7353658.1 ubiquitin-conjugating enzyme [Nitzschia inconspicua] diamond 2028 153 0.993464052287582 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua
28574259 28574259 PRJEB58983_P_NODE_26387_length_259_cov_1.392473_g25972_i0 PRJEB58983 26387 259 1.392473 3.60650507 Cylindrotheca 2852 SAR_Eukaryotes SAR_Eukaryotes 105 2.59e-24   NR CAJ1950724.1 2856 g25972 i0 59.7 2.71042471042471 77 31 89.2 0 18 248 549 625 CAJ1950724.1 unnamed protein product [Cylindrotheca closterium] diamond 702 106 0.990566037735849 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
31297478 31297478 PRJEB58983_P_NODE_26875_length_257_cov_1.211957_g26460_i0 PRJEB58983 26875 257 1.211957 3.11472949 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 100 1.46e-25   NR AID23594.1 2850 g26460 i0 93.6 0.54863813229572 47 3 54.9 0 257 117 53 99 AID23594.1 ubiquitin-ribosomal protein fusion S27a, partial [Phaeodactylum tricornutum] diamond 141 100 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;