RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJEB58983" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 14 ✖

tax_clade 1

bioproject 1

  • PRJEB58983 · 14 ✖

analysis 1

  • diamond · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6502879 6502879 PRJEB58983_P_NODE_11826_length_366_cov_2.802048_g11411_i0 PRJEB58983 11826 366 2.802048 10.25549568 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 134 2.97e-37   NR XP_028869867.1 462227 g11411 i0 55.6 11.9672131147541 124 52 99.2 1 4 366 24 147 XP_028869867.1 Eukaryotic translation initiation factor 5A [Babesia sp. Xinjiang] diamond 4380 134 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia sp. Xinjiang
9052114 9052114 PRJEB58983_P_NODE_23188_length_273_cov_2.835000_g22773_i0 PRJEB58983 23188 273 2.835 7.73955 root 1 Root_unresolved Root_unresolved 101 1.07e-22   NR XP_627193.1 353152 g22773 i0 58.2 1.97802197802198 91 37 98.9 1 273 4 532 622 XP_627193.1 Eft2p GTpase; translation elongation factor 2 (EF-2), partial [Cryptosporidium parvum Iowa II] diamond 540 101 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum
27248084 27248084 PRJEB58983_P_NODE_20383_length_288_cov_1.223256_g19968_i0 PRJEB58983 20383 288 1.223256 3.52297728 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 59.7 6.99e-8   NR XP_034420212.1 5823 g19968 i0 30.9 2.9375 94 63 95.8 1 284 9 189 282 XP_034420212.1 coatomer subunit beta, putative [Plasmodium berghei ANKA] diamond 846 60.1 0.993344425956739 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
27602489 27602489 PRJEB58983_P_NODE_29884_length_248_cov_0.891429_g29469_i0 PRJEB58983 29884 248 0.891429 2.21074392 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 72.8 1.04e-12   NR XP_013349515.1 44415 g29469 i0 53.4 2.10483870967742 58 27 70.2 0 5 178 410 467 XP_013349515.1 exportin, putative [Eimeria mitis] diamond 522 72.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
28321683 28321683 PRJEB58983_P_NODE_15146_length_328_cov_1.803922_g14731_i0 PRJEB58983 15146 328 1.803922 5.91686416 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 91.7 6.95e-19   NR XP_001614924.1 5855 g14731 i0 42.3 5.07621951219512 111 61 98.8 3 327 4 192 302 XP_001614924.1 hypothetical protein, conserved [Plasmodium vivax] diamond 1665 91.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vivax
28391640 28391640 PRJEB58983_P_NODE_12846_length_352_cov_3.534050_g12431_i0 PRJEB58983 12846 352 3.53405 12.439856 Cardiosporidium cionae 476202 SAR_Eukaryotes SAR_Eukaryotes 133 7.86e-35   NR KAF8822296.1 476202 g12431 i0 53.9 4.51704545454545 115 53 98 0 347 3 108 222 KAF8822296.1 ribosomal protein RPL4 [Cardiosporidium cionae] diamond 1590 133 1 Eukaryota Sar   Apicomplexa Aconoidasida Nephromycida   Cardiosporidium Cardiosporidium cionae
28605905 28605905 PRJEB58983_P_NODE_19727_length_291_cov_2.743119_g19312_i0 PRJEB58983 19727 291 2.743119 7.98247629 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 72.4 3.25e-13   NR XP_067071933.1 5824 g19312 i0 44.2 7.04123711340206 86 45 87.6 2 286 32 109 192 XP_067071933.1 60S ribosomal protein L6 [Plasmodium brasilianum] diamond 2049 72.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
29275584 29275584 PRJEB58983_P_NODE_30169_length_247_cov_1.655172_g29754_i0 PRJEB58983 30169 247 1.655172 4.08827484 Cryptosporidium parvum Iowa II 353152 SAR_Eukaryotes SAR_Eukaryotes 59.7 2.64e-8   NR XP_626367.1 353152 g29754 i0 38.2 0.825910931174089 68 42 82.6 0 1 204 179 246 XP_626367.1 proteasome regulatory subunit, NTN hydrolase fold, partial [Cryptosporidium parvum Iowa II] diamond 204 59.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum
29710610 29710610 PRJEB58983_P_NODE_15230_length_327_cov_2.633858_g14815_i0 PRJEB58983 15230 327 2.633858 8.61271566 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 115 1.53e-30   NR GFE54039.1 5869 g14815 i0 56.5 8.72477064220183 108 45 98.2 2 324 4 1 107 GFE54039.1 60S ribosomal protein L31 [Babesia ovis] diamond 2853 115 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovis
29742331 29742331 PRJEB58983_P_NODE_26530_length_258_cov_2.216216_g26115_i0 PRJEB58983 26530 258 2.216216 5.71783728 Eucoccidiorida 75739 SAR_Eukaryotes SAR_Eukaryotes 119 5.470000000000001e-29   NR OEH78841.1 88456 g26115 i0 64 10 86 31 100 0 258 1 1006 1091 OEH78841.1 clathrin heavy chain [Cyclospora cayetanensis] diamond 2580 120 0.991666666666667 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
29844049 29844049 PRJEB58983_P_NODE_21671_length_281_cov_1.384615_g21256_i0 PRJEB58983 21671 281 1.384615 3.89076815 Theileria orientalis strain Shintoku 869250 SAR_Eukaryotes SAR_Eukaryotes 51.6 4.45e-5   NR XP_009689739.1 869250 g21256 i0 31.6 2.98932384341637 76 47 81.1 2 3 230 204 274 XP_009689739.1 polyadenylate-binding protein [Theileria orientalis strain Shintoku] diamond 840 51.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis
30152961 30152961 PRJEB58983_P_NODE_33212_length_237_cov_2.390244_g32797_i0 PRJEB58983 33212 237 2.390244 5.66487828 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 94 5.889999999999999e-23   NR XP_013436144.1 51315 g32797 i0 78.2 2.44303797468354 55 12 69.6 0 235 71 30 84 XP_013436144.1 60S ribosomal protein L37, putative [Eimeria necatrix] diamond 579 94 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
30658728 30658728 PRJEB58983_P_NODE_30473_length_246_cov_2.260116_g30058_i0 PRJEB58983 30473 246 2.260116 5.55988536 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 106 7.62e-25   NR XP_029218259.1 94643 g30058 i0 61 13 82 31 98.8 1 2 244 271 352 XP_029218259.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide DDX6 [Besnoitia besnoiti] diamond 3198 106 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
31575534 31575534 PRJEB58983_P_NODE_12276_length_359_cov_4.356643_g11861_i0 PRJEB58983 12276 359 4.356643 15.64034837 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 131 6.909999999999999e-37   NR XP_003884403.1 572307 g11861 i0 57.7 10.3537604456825 104 44 86.9 0 359 48 12 115 XP_003884403.1 hypothetical protein NCLIV_048030 [Neospora caninum Liverpool] diamond 3717 131 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;