RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB56699" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB56699 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27001716 27001716 PRJEB56699_P_NODE_6662_length_151_cov_2.163934_g6432_i0 PRJEB56699 6662 151 2.163934 3.26754034 Rheinheimera sp. D18 2545632 Bacteria Bacteria 53.9 1.21e-6   NR WP_132584183.1 2545632 g6432 i0 55.6 0.894039735099338 45 20 89.4 0 138 4 438 482 WP_132584183.1 hypothetical protein [Rheinheimera sp. D18] diamond 135 53.9 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera sp. D18
28423386 28423386 PRJEB56699_P_NODE_4866_length_214_cov_1.540541_g4636_i0 PRJEB56699 4866 214 1.540541 3.29675774 Niabella hibiscisoli 1825928 Bacteria Bacteria 42.4 0.0268   NR WP_240847907.1 1825928 g4636 i0 48.6 0.490654205607477 35 18 49.1 0 78 182 36 70 WP_240847907.1 J domain-containing protein [Niabella hibiscisoli] diamond 105 42.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Niabella Niabella hibiscisoli

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;