RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB56699" and tax_clade = "Opisthokonta"

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tax_phylum 2

tax_kingdom 2

tax_superkingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJEB56699 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26931915 26931915 PRJEB56699_P_NODE_2902_length_318_cov_13.660900_g2672_i0 PRJEB56699 2902 318 13.6609 43.441662 Saccharomycetaceae 4893 Fungi Fungi 63.2 7.63e-10   NR KAF4001137.1 4932 g2672 i0 54.5 3.09433962264151 66 20 62.3 1 4 201 51 106 KAF4001137.1 Protein TAR1 domain protein [Saccharomyces cerevisiae] diamond 984 63.5 0.995275590551181 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae
27001715 27001715 PRJEB56699_P_NODE_5622_length_193_cov_2.189024_g5392_i0 PRJEB56699 5622 193 2.189024 4.22481632 Bufotes viridis 30338 Chordata Chordata 49.3 9.26e-5   NR CAK8629749.1 30338 g5392 i0 71.4 0.435233160621762 28 8 43.5 0 138 55 337 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 84 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;