RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB55250" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

bioproject 1

  • PRJEB55250 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21393892 21393892 PRJEB55250_P_NODE_10577_length_257_cov_1.619565_g10453_i0 PRJEB55250 10577 257 1.619565 4.16228205 root 1 Root_unresolved Root_unresolved 97.1 2.32e-23   NR WP_188680572.1 399579 g10453 i0 55.4 8.67315175097276 83 34 96.9 1 250 2 2 81 WP_188680572.1 peroxiredoxin [Thermogymnomonas acidicola] diamond 2229 97.1 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales   Thermogymnomonas Thermogymnomonas acidicola
27570664 27570664 PRJEB55250_P_NODE_16664_length_241_cov_0.916667_g16540_i0 PRJEB55250 16664 241 0.916667 2.20916747 Candidatus Methanoperedens sp. 2032688 Archaea Archaea 71.6 1.39e-12   NR MCX9025066.1 2032688 g16540 i0 67.4 0.572614107883817 46 15 57.3 0 140 3 8 53 MCX9025066.1 hypothetical protein [Candidatus Methanoperedens sp.] diamond 138 71.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens sp.
29584387 29584387 PRJEB55250_P_NODE_6530_length_288_cov_1.293023_g6406_i0 PRJEB55250 6530 288 1.293023 3.72390624 root 1 Root_unresolved Root_unresolved 76.3 5.81e-14   NR MBR19370.1 2026739 g6406 i0 76.2 0.875 42 10 43.8 0 1 126 278 319 MBR19370.1 ribonucleotide-diphosphate reductase subunit beta [Methanobacteriota archaeon] diamond 252 76.3 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
31898486 31898486 PRJEB55250_P_NODE_5957_length_295_cov_1.378378_g5833_i0 PRJEB55250 5957 295 1.378378 4.0662151 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 88.6 4.45e-20   NR MAG24944.1 2026773 g5833 i0 65.7 0.68135593220339 67 22 68.1 1 92 292 3 68 MAG24944.1 terminase [Candidatus Pacearchaeota archaeon] diamond 201 88.6 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;