RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB55250" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB55250 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26875648 26875648 PRJEB55250_P_NODE_12181_length_250_cov_0.870056_g12057_i0 PRJEB55250 12181 250 0.870056 2.17514 Sphaerochaeta globosa 1131703 Bacteria Bacteria 51.6 1.43e-5   NR WP_013606892.1 1131703 g12057 i0 41.5 1.56 65 38 78 0 247 53 120 184 WP_013606892.1 ribosome recycling factor [Sphaerochaeta globosa] diamond 390 51.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta globosa
27191495 27191495 PRJEB55250_P_NODE_16922_length_235_cov_2.320988_g16798_i0 PRJEB55250 16922 235 2.320988 5.4543218 Spirochaetota bacterium 2202144 Bacteria Bacteria 69.7 1.04e-11   NR HPR49932.1 2202144 g16798 i0 56 0.638297872340426 50 22 63.8 0 84 233 64 113 HPR49932.1 DUF616 domain-containing protein [Spirochaetota bacterium] diamond 150 69.7 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
29812324 29812324 PRJEB55250_P_NODE_4111_length_339_cov_1.736842_g3987_i0 PRJEB55250 4111 339 1.736842 5.88789438 Leptospiraceae bacterium 2026757 Bacteria Bacteria 160 9.88e-46   NR GIX40476.1 2026757 g3987 i0 76 10.5044247787611 100 24 88.5 0 302 3 7 106 GIX40476.1 MAG: thioredoxin reductase [Leptospiraceae bacterium] diamond 3561 160 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;