RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB55250" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB55250 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15424150 15424150 PRJEB55250_P_NODE_16193_length_242_cov_0.911243_g16069_i0 PRJEB55250 16193 242 0.911243 2.20520806 Trypanosoma 5690 Euglenozoa other_Eukaryota 131 1.01e-33   NR 6V6H_A 5693 g16069 i0 71.3 5.9504132231405 80 23 99.2 0 2 241 270 349 6V6H_A Chain A, Histidine ammonia-lyase [Trypanosoma cruzi] diamond 1440 131 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
28581188 28581188 PRJEB55250_P_NODE_10907_length_254_cov_2.779006_g10783_i0 PRJEB55250 10907 254 2.779006 7.05867524 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 124 5.25e-34   NR KAJ9465486.1 91374 g10783 i0 67.9 0.992125984251969 84 27 99.2 0 1 252 49 132 KAJ9465486.1 ADP-ribosylation factor-like protein 8 [Diplonema papillatum] diamond 252 124 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
30570450 30570450 PRJEB55250_P_NODE_5513_length_304_cov_1.969697_g5389_i0 PRJEB55250 5513 304 1.969697 5.98787888 Euglena gracilis 3039 Euglenozoa other_Eukaryota 110 3.94e-29   NR QLA09588.1 3039 g5389 i0 65 4.66776315789474 80 28 78.9 0 7 246 1 80 QLA09588.1 40S small subunit ribosomal protein eS21 [Euglena gracilis] diamond 1419 110 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;