RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB55250" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB55250 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
121903 121903 PRJEB55250_P_NODE_7161_length_283_cov_1.228571_g7037_i0 PRJEB55250 7161 283 1.228571 3.47685593 root 1 Root_unresolved Root_unresolved 147 2.4e-40   NR XP_039260094.1 7725 g7037 i0 77.4 14.7879858657244 93 21 98.6 0 281 3 160 252 XP_039260094.1 glutaryl-CoA dehydrogenase, mitochondrial-like isoform X1 [Styela clava] diamond 4185 147 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
30911639 30911639 PRJEB55250_P_NODE_16894_length_235_cov_3.814815_g16770_i0 PRJEB55250 16894 235 3.814815 8.96481525 root 1 Root_unresolved Root_unresolved 159 1.7899999999999996e-43   NR XP_030109804.2 10090 g16770 i0 98.7 12.9446808510638 78 1 99.6 0 235 2 5 82 XP_030109804.2 uncharacterized protein Gm52666 [Mus musculus] diamond 3042 160 0.99375 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
31993365 31993365 PRJEB55250_P_NODE_11138_length_253_cov_1.616667_g11014_i0 PRJEB55250 11138 253 1.616667 4.09016751 Staurois parvus 386267 Chordata Chordata 60.5 4.59e-10   NR CAI9620946.1 386267 g11014 i0 70.3 0.438735177865613 37 11 43.9 0 4 114 23 59 CAI9620946.1 unnamed protein product [Staurois parvus] diamond 111 60.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;