RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB55250" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJEB55250 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29023475 29023475 PRJEB55250_P_NODE_11768_length_251_cov_0.865169_g11644_i0 PRJEB55250 11768 251 0.865169 2.17157419 Scenedesmus sp. PABB 2909984 Plants Plants 62.4 4.91e-9   NR KAF8058474.1 2742167 g11644 i0 46.5 0.848605577689243 71 34 82.5 2 247 41 116 184 KAF8058474.1 hypothetical protein HT031_005598 [Scenedesmus sp. PABB004] diamond 213 62.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. PABB004
31448962 31448962 PRJEB55250_P_NODE_6136_length_291_cov_2.128440_g6012_i0 PRJEB55250 6136 291 2.12844 6.1937604 Chlorellales 35460 Plants Plants 135 9.19e-39   NR KAI3426859.1 3077 g6012 i0 78.4 7.21649484536082 88 16 89.7 2 290 30 38 123 KAI3426859.1 hypothetical protein D9Q98_006805 [Chlorella vulgaris] diamond 2100 135 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
32681894 32681894 PRJEB55250_P_NODE_16380_length_241_cov_1.375000_g16256_i0 PRJEB55250 16380 241 1.375 3.31375 Viridiplantae 33090 Plants Plants 91.7 1.59e-19   NR CAK0785623.1 1274662 g16256 i0 63.5 8.39004149377593 74 25 92.1 2 223 2 4 75 CAK0785623.1 hypothetical protein CVIRNUC_008834 [Coccomyxa viridis] diamond 2022 91.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;