RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB55122" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB55122 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26812092 26812092 PRJEB55122_P_NODE_37521_length_168_cov_0.873950_g37124_i0 PRJEB55122 37521 168 0.87395 1.468236 Opisthorchis viverrini 6198 Platyhelminthes Platyhelminthes 43.9 0.00387   NR XP_009165627.1 6198 g37124 i0 60 2.625 35 14 62.5 0 134 30 122 156 XP_009165627.1 hypothetical protein T265_02984 [Opisthorchis viverrini] diamond 441 43.9 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Opisthorchis Opisthorchis viverrini
27065089 27065089 PRJEB55122_P_NODE_32962_length_181_cov_1.181818_g32565_i0 PRJEB55122 32962 181 1.181818 2.13909058 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 48.9 1.08e-4   NR AEK32590.1 6183 g32565 i0 42.9 1.85635359116022 56 32 92.8 0 181 14 18 73 AEK32590.1 venom allergen-like protein 6 isoform 36 [Schistosoma mansoni] diamond 336 48.9 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
27602452 27602452 PRJEB55122_P_NODE_41484_length_164_cov_0.904348_g41087_i0 PRJEB55122 41484 164 0.904348 1.48313072 Mesocestoides corti 53468 Platyhelminthes Platyhelminthes 70.1 1.79e-13   NR VDD74301.1 53468 g41087 i0 63.8 1.71951219512195 47 17 86 0 141 1 1 47 VDD74301.1 unnamed protein product [Mesocestoides corti] diamond 282 70.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Mesocestoididae Mesocestoides Mesocestoides corti
32688746 32688746 PRJEB55122_P_NODE_43700_length_162_cov_0.920354_g43303_i0 PRJEB55122 43700 162 0.920354 1.49097348 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 65.5 1.16e-10   NR VZI48410.1 99802 g43303 i0 60.4 7.85185185185185 53 21 98.1 0 3 161 252 304 VZI48410.1 unnamed protein product [Spirometra erinaceieuropaei] diamond 1272 65.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;