RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB55122" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB55122 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27311518 27311518 PRJEB55122_P_NODE_35943_length_171_cov_0.852459_g35546_i0 PRJEB55122 35943 171 0.852459 1.45770489 Valvatida 41166 Echinodermata other_Eukaryota 48.5 1.27e-4   NR XP_038074274.1 46514 g35546 i0 51.9 1.82456140350877 52 24 91.2 1 157 2 609 659 XP_038074274.1 calcium permeable stress-gated cation channel 1-like isoform X1 [Patiria miniata] diamond 312 48.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
28006209 28006209 PRJEB55122_P_NODE_37225_length_168_cov_2.218487_g36828_i0 PRJEB55122 37225 168 2.218487 3.72705816 Metazoa 33208 Echinodermata other_Eukaryota 44.3 4.33e-4   NR XP_030837588.1 7668 g36828 i0 95 30.7142857142857 20 1 35.7 0 1 60 45 64 XP_030837588.1 stress-associated endoplasmic reticulum protein 2-like [Strongylocentrotus purpuratus] diamond 5160 44.7 0.991051454138702 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
31006246 31006246 PRJEB55122_P_NODE_32974_length_181_cov_1.181818_g32577_i0 PRJEB55122 32974 181 1.181818 2.13909058 Metazoa 33208 Echinodermata other_Eukaryota 109 2.2600000000000003e-27   NR XP_054756039.2 7653 g32577 i0 81.7 5.96685082872928 60 11 99.4 0 2 181 59 118 XP_054756039.2 T-complex protein 1 subunit gamma-like [Lytechinus pictus] diamond 1080 110 0.990909090909091 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;