RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJEB55122" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB55122 · 29 ✖

analysis 1

  • diamond · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5223725 5223725 PRJEB55122_P_NODE_38245_length_167_cov_1.398305_g37848_i0 PRJEB55122 38245 167 1.398305 2.33516935 Metazoa 33208 Chordata Chordata 116 1.7299999999999999e-28   NR KAK9409627.1 8729 g37848 i0 90.9 43.4730538922156 55 5 98.8 0 167 3 113 167 KAK9409627.1 signal recognition particle 54 kDa protein [Crotalus adamanteus] diamond 7260 117 0.991452991452991 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
7772806 7772806 PRJEB55122_P_NODE_12887_length_338_cov_0.968858_g12490_i0 PRJEB55122 12887 338 0.968858 3.27474004 Chordata 7711 Chordata Chordata 119 5.329999999999999e-31   NR XP_039265886.1 7725 g12490 i0 57.1 5.98224852071006 112 48 99.4 0 336 1 78 189 XP_039265886.1 60S ribosomal protein L13-like [Styela clava] diamond 2022 120 0.991666666666667 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
11599468 11599468 PRJEB55122_P_NODE_31570_length_186_cov_1.138686_g31173_i0 PRJEB55122 31570 186 1.138686 2.11795596 Metazoa 33208 Chordata Chordata 87 2.57e-18   NR XP_048641875.1 9994 g31173 i0 69.4 10.9838709677419 62 18 100 1 186 1 304 364 XP_048641875.1 F-actin-capping protein subunit alpha-2 [Marmota marmota marmota] diamond 2043 87.4 0.995423340961098 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota marmota
26716622 26716622 PRJEB55122_P_NODE_41241_length_164_cov_0.904348_g40844_i0 PRJEB55122 41241 164 0.904348 1.48313072 Branchiostoma belcheri 7741 Chordata Chordata 60.8 5.13e-9   NR KAI8493301.1 7741 g40844 i0 50 7.55487804878049 52 26 95.1 0 2 157 184 235 KAI8493301.1 hypothetical protein Bbelb_293050 [Branchiostoma belcheri] diamond 1239 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
28100572 28100572 PRJEB55122_P_NODE_38585_length_167_cov_0.881356_g38188_i0 PRJEB55122 38585 167 0.881356 1.47186452 Metazoa 33208 Chordata Chordata 83.6 5.09e-17   NR XP_030744766.2 9371 g38188 i0 85.5 55.3293413173653 55 8 98.8 0 1 165 249 303 XP_030744766.2 major vault protein [Echinops telfairi] diamond 9240 84.3 0.991696322657177 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Tenrecidae Echinops Echinops telfairi
28107318 28107318 PRJEB55122_P_NODE_44365_length_153_cov_4.548077_g43968_i0 PRJEB55122 44365 153 4.548077 6.95855781 Bufotes viridis 30338 Chordata Chordata 47.8 1.9e-4   NR CAK8609802.1 30338 g43968 i0 55.9 1.3921568627451 34 15 66.7 0 52 153 1 34 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 213 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28233468 28233468 PRJEB55122_P_NODE_17346_length_273_cov_1.683036_g16949_i0 PRJEB55122 17346 273 1.683036 4.59468828 Tyrannus savana 137541 Chordata Chordata 57.4 2.37e-7   NR NXL99007.1 137541 g16949 i0 38 0.868131868131868 79 39 81.3 2 30 251 134 207 NXL99007.1 CATG protein [Tyrannus savana] diamond 237 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Tyrannidae Tyrannus Tyrannus savana
28517997 28517997 PRJEB55122_P_NODE_22827_length_227_cov_2.393258_g22430_i0 PRJEB55122 22827 227 2.393258 5.43269566 Staurois parvus 386267 Chordata Chordata 52 1.13e-6   NR CAI9616278.1 386267 g22430 i0 85.7 1.50660792951542 28 4 37 0 46 129 4 31 CAI9616278.1 unnamed protein product [Staurois parvus] diamond 342 52 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28991844 28991844 PRJEB55122_P_NODE_27308_length_203_cov_1.688312_g26911_i0 PRJEB55122 27308 203 1.688312 3.42727336 Branchiostoma belcheri 7741 Chordata Chordata 45.1 0.00333   NR KAI8491028.1 7741 g26911 i0 42.4 4.31527093596059 59 27 81.3 2 34 198 261 316 KAI8491028.1 hypothetical protein Bbelb_310690 [Branchiostoma belcheri] diamond 876 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29016697 29016697 PRJEB55122_P_NODE_42548_length_163_cov_0.912281_g42151_i0 PRJEB55122 42548 163 0.912281 1.48701803 Mammalia 40674 Chordata Chordata 104 8.54e-25   NR XP_043946209.1 7888 g42151 i0 88.9 7.95092024539877 54 6 99.4 0 162 1 303 356 XP_043946209.1 adenosylhomocysteinase [Protopterus annectens] diamond 1296 104 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
29181161 29181161 PRJEB55122_P_NODE_36709_length_169_cov_0.866667_g36312_i0 PRJEB55122 36709 169 0.866667 1.46466723 Branchiostoma lanceolatum 7740 Chordata Chordata 67 2.34e-11   NR CAH1267972.1 7740 g36312 i0 53.3 1.06508875739645 60 24 99.4 2 169 2 110 169 CAH1267972.1 AASDHPPT [Branchiostoma lanceolatum] diamond 180 67 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
29307212 29307212 PRJEB55122_P_NODE_42589_length_163_cov_0.912281_g42192_i0 PRJEB55122 42589 163 0.912281 1.48701803 Cnephaeus nilssonii 3371016 Chordata Chordata 40.8 0.0231   NR KAK1337430.1 3371016 g42192 i0 61.5 0.478527607361963 26 10 47.9 0 78 155 83 108 KAK1337430.1 hypothetical protein QTO34_002057, partial [Cnephaeus nilssonii] diamond 78 40.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Cnephaeus Cnephaeus nilssonii
29395269 29395269 PRJEB55122_P_NODE_31709_length_185_cov_1.529412_g31312_i0 PRJEB55122 31709 185 1.529412 2.8294122 root 1 Root_unresolved Root_unresolved 139 1.31e-36   NR XP_029332929.1 10089 g31312 i0 98.4 14.8378378378378 61 1 98.9 0 1 183 793 853 XP_029332929.1 LOW QUALITY PROTEIN: uncharacterized protein LOC110295489 [Mus caroli] diamond 2745 140 0.992857142857143 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus caroli
29717439 29717439 PRJEB55122_P_NODE_11550_length_366_cov_2.618297_g11153_i0 PRJEB55122 11550 366 2.618297 9.58296702 Pristis pectinata 685728 Chordata Chordata 70.5 2.04e-11   NR XP_051877584.1 685728 g11153 i0 42.5 1.54098360655738 80 46 65.6 0 300 61 203 282 XP_051877584.1 UPF0488 protein C8orf33 homolog [Pristis pectinata] diamond 564 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rhinopristiformes Pristidae Pristis Pristis pectinata
29749008 29749008 PRJEB55122_P_NODE_35271_length_173_cov_1.258065_g34874_i0 PRJEB55122 35271 173 1.258065 2.17645245 Phallusia mammillata 59560 Chordata Chordata 57.4 9.87e-8   NR CAB3231439.1 59560 g34874 i0 69.4 0.624277456647399 36 8 57.2 1 100 2 381 416 CAB3231439.1 creatine kinase, flagellar-like [Phallusia mammillata] diamond 108 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
30026961 30026961 PRJEB55122_P_NODE_36831_length_169_cov_0.866667_g36434_i0 PRJEB55122 36831 169 0.866667 1.46466723 Aves 8782 Chordata Chordata 94 2.32e-21   NR XP_068788306.1 8801 g36434 i0 80 25.3846153846154 55 11 97.6 0 1 165 250 304 XP_068788306.1 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial isoform X1 [Struthio camelus] diamond 4290 94 1 Eukaryota Opisthokonta Metazoa Chordata Aves Struthioniformes Struthionidae Struthio Struthio camelus
30033674 30033674 PRJEB55122_P_NODE_32371_length_183_cov_1.246269_g31974_i0 PRJEB55122 32371 183 1.246269 2.28067227 Cnephaeus nilssonii 3371016 Chordata Chordata 66.6 6.36e-11   NR KAK1334663.1 3371016 g31974 i0 68.1 0.770491803278688 47 15 77 0 43 183 268 314 KAK1334663.1 LOW QUALITY PROTEIN: hypothetical protein QTO34_005671 [Cnephaeus nilssonii] diamond 141 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Cnephaeus Cnephaeus nilssonii
30248220 30248220 PRJEB55122_P_NODE_8232_length_466_cov_3.318945_g7839_i0 PRJEB55122 8232 466 3.318945 15.4662837 root 1 Root_unresolved Root_unresolved 320 1.0299999999999998e-106   NR XP_036010302.1 10090 g7839 i0 100 14.9678111587983 155 0 99.8 0 466 2 3 157 XP_036010302.1 uncharacterized protein Gm53410 [Mus musculus] diamond 6975 320 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30255019 30255019 PRJEB55122_P_NODE_20652_length_243_cov_1.340206_g20255_i0 PRJEB55122 20652 243 1.340206 3.25670058 Erpetoichthys calabaricus 27687 Chordata Chordata 47 0.00118   NR XP_028678163.2 27687 g20255 i0 57.1 0.876543209876543 35 14 42 1 71 172 197 231 XP_028678163.2 zinc finger protein 883-like isoform X2 [Erpetoichthys calabaricus] diamond 213 47 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
30350079 30350079 PRJEB55122_P_NODE_22352_length_230_cov_5.530387_g21955_i0 PRJEB55122 22352 230 5.530387 12.7198901 Ranitomeya imitator 111125 Chordata Chordata 46.2 0.0018600000000000001   NR CAJ0929079.1 111125 g21955 i0 68.8 1.87826086956522 32 10 41.7 0 134 229 2 33 CAJ0929079.1 unnamed protein product [Ranitomeya imitator] diamond 432 46.6 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
30532285 30532285 PRJEB55122_P_NODE_33033_length_180_cov_3.175573_g32636_i0 PRJEB55122 33033 180 3.175573 5.7160314 root 1 Root_unresolved Root_unresolved 132 1.9399999999999993e-34   NR XP_030110853.2 10090 g32636 i0 100 22.6166666666667 59 0 98.3 0 2 178 171 229 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 4071 132 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30658726 30658726 PRJEB55122_P_NODE_7613_length_494_cov_2.570787_g7221_i0 PRJEB55122 7613 494 2.570787 12.69968778 Metazoa 33208 Chordata Chordata 206 2.86e-58   NR XP_053561745.1 8345 g7221 i0 61.1 35.4291497975709 162 63 98.4 0 1 486 430 591 XP_053561745.1 WD repeat-containing protein 3 [Bombina bombina] diamond 17502 207 0.995169082125604 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
30848330 30848330 PRJEB55122_P_NODE_26534_length_207_cov_1.291139_g26137_i0 PRJEB55122 26534 207 1.291139 2.67265773 Metazoa 33208 Chordata Chordata 62.8 2.02e-9   NR CAH1266510.1 7740 g26137 i0 50.8 6.8695652173913 59 29 85.5 0 201 25 348 406 CAH1266510.1 Hypp3401 [Branchiostoma lanceolatum] diamond 1422 63.2 0.993670886075949 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
31322278 31322278 PRJEB55122_P_NODE_28655_length_197_cov_1.405405_g28258_i0 PRJEB55122 28655 197 1.405405 2.76864785 Metazoa 33208 Chordata Chordata 79.3 2.57e-15   NR XP_016152541.1 59894 g28258 i0 60.3 18.8375634517766 58 23 88.3 0 174 1 114 171 XP_016152541.1 PREDICTED: phospholipase B1, membrane-associated [Ficedula albicollis] diamond 3711 80.1 0.990012484394507 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Muscicapidae Ficedula Ficedula albicollis
31360900 31360900 PRJEB55122_P_NODE_43876_length_161_cov_2.428571_g43479_i0 PRJEB55122 43876 161 2.428571 3.90999931 Staurois parvus 386267 Chordata Chordata 43.9 3.42e-4   NR CAI9587454.1 386267 g43479 i0 85.7 0.391304347826087 21 3 39.1 0 1 63 11 31 CAI9587454.1 unnamed protein product, partial [Staurois parvus] diamond 63 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
31423967 31423967 PRJEB55122_P_NODE_12116_length_354_cov_0.901639_g11719_i0 PRJEB55122 12116 354 0.901639 3.19180206 Geotrypetes seraphini 260995 Chordata Chordata 122 1.93e-30   NR XP_033812390.1 260995 g11719 i0 65 0.677966101694915 80 28 67.8 0 353 114 248 327 XP_033812390.1 calreticulin-3 isoform X2 [Geotrypetes seraphini] diamond 240 122 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Dermophiidae Geotrypetes Geotrypetes seraphini
31487478 31487478 PRJEB55122_P_NODE_33156_length_180_cov_1.572519_g32759_i0 PRJEB55122 33156 180 1.572519 2.8305341999999998 Branchiostoma belcheri 7741 Chordata Chordata 41.6 0.0409   NR KAI8500370.1 7741 g32759 i0 60 0.416666666666667 25 10 41.7 0 154 80 281 305 KAI8500370.1 hypothetical protein Bbelb_219360 [Branchiostoma belcheri] diamond 75 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
32056640 32056640 PRJEB55122_P_NODE_41818_length_164_cov_0.895652_g41421_i0 PRJEB55122 41818 164 0.895652 1.46886928 Tiliqua scincoides 71010 Chordata Chordata 61.6 2.77e-9   NR XP_066484436.1 71010 g41421 i0 97.1 62.1951219512195 34 1 62.2 0 162 61 644 677 XP_066484436.1 major vault protein [Tiliqua scincoides] diamond 10200 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Scincidae Tiliqua Tiliqua scincoides
32176682 32176682 PRJEB55122_P_NODE_38918_length_167_cov_0.881356_g38521_i0 PRJEB55122 38918 167 0.881356 1.47186452 Leptocardii 2682552 Chordata Chordata 50.8 6.04e-6   NR XP_035686280.1 7739 g38521 i0 42.6 3.25149700598802 47 27 84.4 0 142 2 10 56 XP_035686280.1 NPC intracellular cholesterol transporter 2-like [Branchiostoma floridae] diamond 543 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;