RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB55122" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB55122 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2671392 2671392 PRJEB55122_P_NODE_41243_length_164_cov_0.904348_g40846_i0 PRJEB55122 41243 164 0.904348 1.48313072 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 108 3.13e-28   NR MCX7827560.1 2499141 g40846 i0 100 0.98780487804878 54 0 98.8 0 163 2 50 103 MCX7827560.1 SLC13 family permease [Verrucomicrobiia bacterium] diamond 162 108 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29023470 29023470 PRJEB55122_P_NODE_31568_length_186_cov_1.138686_g31171_i0 PRJEB55122 31568 186 1.138686 2.11795596 Oligosphaeraceae bacterium 2699751 Bacteria Bacteria 42.4 0.0237   NR NLF92602.1 2699751 g31171 i0 46.2 0.629032258064516 39 19 59.7 1 3 113 227 265 NLF92602.1 hypothetical protein [Oligosphaeraceae bacterium] diamond 117 42.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota Oligosphaeria Oligosphaerales Oligosphaeraceae   Oligosphaeraceae bacterium
31107673 31107673 PRJEB55122_P_NODE_22475_length_230_cov_1.149171_g22078_i0 PRJEB55122 22475 230 1.149171 2.6430933 Gemmataceae bacterium 2052164 Bacteria Bacteria 41.6 0.0438   NR HMF19476.1 2052164 g22078 i0 30 0.91304347826087 70 37 75.7 1 6 179 56 125 HMF19476.1 hypothetical protein [Gemmataceae bacterium] diamond 210 41.6 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
32468271 32468271 PRJEB55122_P_NODE_21439_length_237_cov_1.659574_g21042_i0 PRJEB55122 21439 237 1.659574 3.93319038 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 54.7 1.25e-6   NR MEE2988659.1 2026799 g21042 i0 53.8 0.658227848101266 52 24 65.8 0 6 161 171 222 MEE2988659.1 LysM peptidoglycan-binding domain-containing protein [Verrucomicrobiota bacterium] diamond 156 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;