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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJEB50765" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 11 ✖

tax_clade 1

bioproject 1

  • PRJEB50765 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
119568 119568 PRJEB50765_P_NODE_661_length_421_cov_1.807292_g637_i0 PRJEB50765 661 421 1.807292 7.60869932 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 239 1.4e-74   NR KAH9108398.1 100861 g637 i0 83.9 5.85748218527316 137 22 97.6 0 419 9 344 480 KAH9108398.1 hypothetical protein AeMF1_016428 [Aphanomyces euteiches] diamond 2466 239 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
9046778 9046778 PRJEB50765_P_NODE_1008_length_322_cov_1.828070_g984_i0 PRJEB50765 1008 322 1.82807 5.8863854 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 166 1.29e-46   NR KAH9108398.1 100861 g984 i0 83 2.62732919254658 94 16 87.6 0 3 284 387 480 KAH9108398.1 hypothetical protein AeMF1_016428 [Aphanomyces euteiches] diamond 846 166 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
9046789 9046789 PRJEB50765_P_NODE_2848_length_164_cov_1.527559_g2824_i0 PRJEB50765 2848 164 1.5275589999999999 2.50519676 Hyaloperonospora brassicae 162125 SAR_Eukaryotes SAR_Eukaryotes 77 2.37e-15   NR CAI5742847.1 162125 g2824 i0 73.1 3.89634146341463 52 14 95.1 0 3 158 127 178 CAI5742847.1 unnamed protein product [Hyaloperonospora brassicae] diamond 639 77 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
14147899 14147899 PRJEB50765_P_NODE_892_length_350_cov_2.616613_g868_i0 PRJEB50765 892 350 2.616613 9.1581455 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 188 3.6199999999999995e-56   NR OQS04692.1 74557 g868 i0 85.5 14.1771428571429 110 16 94.3 0 19 348 1 110 OQS04692.1 aspartyl/Asparaginyl beta-hydroxylase [Thraustotheca clavata] diamond 4962 188 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
24345406 24345406 PRJEB50765_P_NODE_1320_length_266_cov_1.864629_g1296_i0 PRJEB50765 1320 266 1.864629 4.95991314 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 112 1.17e-29   NR TMW58359.1 41045 g1296 i0 71.6 5.04135338345865 74 21 83.5 0 261 40 45 118 TMW58359.1 hypothetical protein Poli38472_009918 [Pythium oligandrum] diamond 1341 112 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
28201943 28201943 PRJEB50765_P_NODE_2326_length_186_cov_1.046980_g2302_i0 PRJEB50765 2326 186 1.04698 1.9473828 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 91.7 6.81e-20   NR DAZ95755.1 4803 g2302 i0 71.9 1.80645161290323 57 16 91.9 0 1 171 361 417 DAZ95755.1 TPA: hypothetical protein N0F65_006403 [Lagenidium giganteum] diamond 336 91.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
31006242 31006242 PRJEB50765_P_NODE_534_length_472_cov_3.825287_g511_i0 PRJEB50765 534 472 3.825287 18.05535464 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 161 4.93e-43   NR XP_024573476.1 4781 g511 i0 64.7 8.6885593220339 116 41 73.7 0 447 100 533 648 XP_024573476.1 dead deah box helicase [Plasmopara halstedii] diamond 4101 162 0.993827160493827 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
31234024 31234024 PRJEB50765_P_NODE_1695_length_227_cov_2.452632_g1671_i0 PRJEB50765 1695 227 2.452632 5.56747464 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 106 6.080000000000001e-27   NR GLE03297.1 114742 g1671 i0 75.4 6.7136563876652 65 16 85.9 0 196 2 1 65 GLE03297.1 hypothetical protein PINS_up012187 [Pythium insidiosum] diamond 1524 106 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31265854 31265854 PRJEB50765_P_NODE_2235_length_190_cov_0.908497_g2211_i0 PRJEB50765 2235 190 0.908497 1.7261443 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 45.4 1.2e-4   NR TYZ61222.1 1485010 g2211 i0 65.6 0.505263157894737 32 11 50.5 0 94 189 6 37 TYZ61222.1 hypothetical protein PybrP1_011567 [[Pythium] brassicae (nom. inval.)] diamond 96 45.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
31265855 31265855 PRJEB50765_P_NODE_675_length_416_cov_1.810026_g651_i0 PRJEB50765 675 416 1.810026 7.52970816 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 174 2.8e-53   NR TMW55105.1 41045 g651 i0 67.7 4.74519230769231 133 42 95.2 1 396 1 1 133 TMW55105.1 hypothetical protein Poli38472_013867 [Pythium oligandrum] diamond 1974 174 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
32144882 32144882 PRJEB50765_P_NODE_2818_length_165_cov_1.507812_g2794_i0 PRJEB50765 2818 165 1.507812 2.4878898 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 92.4 3.58e-20   NR DAZ99137.1 4803 g2794 i0 83.3 13.7454545454545 54 9 98.2 0 2 163 152 205 DAZ99137.1 TPA: hypothetical protein N0F65_010221 [Lagenidium giganteum] diamond 2268 92.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;