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contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJEB50332" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB50332 · 15 ✖

analysis 1

  • diamond · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1393860 1393860 PRJEB50332_P_NODE_342_length_875_cov_3.900491_g292_i0 PRJEB50332 342 875 3.900491 34.12929625 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 267 1.0599999999999998e-85   NR AAZ38987.1 8668 g292 i0 58.3 46.896 235 85 79.2 4 738 46 10 235 AAZ38987.1 40S ribosomal protein S2, partial [Oxyuranus scutellatus] diamond 41034 269 0.992565055762082 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Oxyuranus Oxyuranus scutellatus
14147782 14147782 PRJEB50332_P_NODE_2352_length_368_cov_1.752443_g2271_i0 PRJEB50332 2352 368 1.752443 6.44899024 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 177 3.74e-51   NR Q9GR88.1 7723 g2271 i0 68.9 126.1875 122 38 99.5 0 2 367 109 230 Q9GR88.1 RecName: Full=Eukaryotic peptide chain release factor subunit 1; Short=Eukaryotic release factor 1; Short=eRF1 [Polyandrocarpa misakiensis] diamond 46437 177 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Polyandrocarpa Polyandrocarpa misakiensis
14147839 14147839 PRJEB50332_P_NODE_712_length_641_cov_2.168966_g635_i0 PRJEB50332 712 641 2.168966 13.90307206 Chordata 7711 Chordata Chordata 288 3.34e-95   NR XP_012422504.1 9708 g635 i0 70.4 14.7051482059282 196 58 91.7 0 640 53 71 266 XP_012422504.1 PREDICTED: guanine nucleotide-binding protein subunit beta-2-like 1 isoform X2 [Odobenus rosmarus divergens] diamond 9426 288 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Odobenidae Odobenus Odobenus rosmarus
21796190 21796190 PRJEB50332_P_NODE_438_length_799_cov_2.888889_g375_i0 PRJEB50332 438 799 2.888889 23.08222311 Mammalia 40674 Chordata Chordata 317 5.46e-98   NR KAF5920767.1 77932 g375 i0 59.8 30.4918648310388 254 97 94.6 2 3 758 666 916 KAF5920767.1 hypothetical protein HPG69_010301 [Diceros bicornis minor] diamond 24363 320 0.990625 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Rhinocerotidae Diceros Diceros bicornis
25217384 25217384 PRJEB50332_P_NODE_3280_length_321_cov_0.946154_g3198_i0 PRJEB50332 3280 321 0.946154 3.03715434 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 119 1.27e-29   NR XP_028340109.1 9755 g3198 i0 72.1 20.5981308411215 86 21 80.4 2 63 320 216 298 XP_028340109.1 ATP-dependent RNA helicase DDX39A isoform X5 [Physeter macrocephalus] diamond 6612 119 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
27090111 27090111 PRJEB50332_P_NODE_6302_length_249_cov_1.553191_g6220_i0 PRJEB50332 6302 249 1.553191 3.86744559 Chordata 7711 Chordata Chordata 49.7 1.46e-4   NR XP_044296782.1 61221 g6220 i0 53.4 2.6144578313253 58 25 69.9 2 15 188 8 63 XP_044296782.1 glutamate-rich protein 3 isoform X1 [Varanus komodoensis] diamond 651 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
27349849 27349849 PRJEB50332_P_NODE_15323_length_206_cov_0.896552_g15241_i0 PRJEB50332 15323 206 0.896552 1.84689712 Branchiostoma lanceolatum 7740 Chordata Chordata 50.8 3.26e-5   NR CAH1272632.1 7740 g15241 i0 42.4 4.35436893203883 59 33 84.5 1 174 1 1250 1308 CAH1272632.1 TNR [Branchiostoma lanceolatum] diamond 897 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
27444669 27444669 PRJEB50332_P_NODE_2343_length_369_cov_1.496753_g2262_i0 PRJEB50332 2343 369 1.496753 5.52301857 Xenopus tropicalis 8364 Chordata Chordata 51.6 8.48e-6   NR NP_001291715.2 8364 g2262 i0 40.8 1.69918699186992 71 40 56.1 2 322 116 13 83 NP_001291715.2 selenoprotein W1 [Xenopus tropicalis] diamond 627 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
28107292 28107292 PRJEB50332_P_NODE_14625_length_207_cov_1.623288_g14543_i0 PRJEB50332 14625 207 1.623288 3.36020616 Hemicordylus capensis 884348 Chordata Chordata 45.4 0.00249   NR XP_053157935.1 884348 g14543 i0 42.9 1.21739130434783 42 24 60.9 0 130 5 21 62 XP_053157935.1 procathepsin L-like [Hemicordylus capensis] diamond 252 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Cordylidae Hemicordylus Hemicordylus capensis
28416593 28416593 PRJEB50332_P_NODE_11646_length_215_cov_2.110390_g11564_i0 PRJEB50332 11646 215 2.11039 4.5373385 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.1 1.22e-16   NR XP_059806222.1 79690 g11564 i0 52.2 23.1488372093023 69 33 96.3 0 213 7 25 93 XP_059806222.1 ras-related protein Rab-21-like isoform X8 [Hypanus sabinus] diamond 4977 80.9 0.990111248454882 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
28985070 28985070 PRJEB50332_P_NODE_17888_length_202_cov_0.921986_g17806_i0 PRJEB50332 17888 202 0.921986 1.86241172 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.1 1.3e-4   NR XP_014424576.1 13735 g17806 i0 42.6 2.88118811881188 68 33 93.6 2 200 12 103 169 XP_014424576.1 ras-related protein Rab-2B [Pelodiscus sinensis] diamond 582 48.1 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Trionychidae Pelodiscus Pelodiscus sinensis
29401959 29401959 PRJEB50332_P_NODE_7549_length_238_cov_1.813559_g7467_i0 PRJEB50332 7549 238 1.813559 4.31627042 Polypterus senegalus 55291 Chordata Chordata 60.5 1.95e-8   NR KAG2469288.1 55291 g7467 i0 72.2 28.5882352941176 36 10 45.4 0 130 237 441 476 KAG2469288.1 KAT5 acetyltransferase, partial [Polypterus senegalus] diamond 6804 60.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
30280001 30280001 PRJEB50332_P_NODE_5652_length_260_cov_1.804020_g5570_i0 PRJEB50332 5652 260 1.80402 4.690452 Aves 8782 Chordata Chordata 92 1.44e-19   NR NWX73917.1 28689 g5570 i0 53.4 19.2807692307692 88 39 99.2 1 1 258 293 380 NWX73917.1 TRXR2 reductase [Alca torda] diamond 5013 92.4 0.995670995670996 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Alcidae Alca Alca torda
31423946 31423946 PRJEB50332_P_NODE_13016_length_210_cov_1.483221_g12934_i0 PRJEB50332 13016 210 1.483221 3.1147641 Sceloporus undulatus 8520 Chordata Chordata 47.4 2.9e-4   NR XP_042322432.1 8520 g12934 i0 35.4 2.78571428571429 65 40 90 1 12 200 62 126 XP_042322432.1 caltractin-like [Sceloporus undulatus] diamond 585 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Phrynosomatidae Sceloporus Sceloporus undulatus
32783137 32783137 PRJEB50332_P_NODE_10840_length_220_cov_1.119497_g10758_i0 PRJEB50332 10840 220 1.119497 2.4628934 Bufotes viridis 30338 Chordata Chordata 43.9 0.0104   NR CAK8609802.1 30338 g10758 i0 63.3 0.940909090909091 30 11 40.9 0 126 215 1 30 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 207 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;