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contig_metadata

28 rows where analysis = "diamond", bioproject = "PRJEB48872" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 28 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB48872 · 28 ✖

analysis 1

  • diamond · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6446924 6446924 PRJEB48872_P_NODE_235106_length_345_cov_1.526144_g219294_i0 PRJEB48872 235106 345 1.526144 5.2651968 root 1 Root_unresolved Root_unresolved 108 1.0099999999999999e-24   NR BAA20419.1 10090 g219294 i0 46.1 6 115 56 95.7 2 331 2 911 1024 BAA20419.1 reverse transcriptase, partial [Mus musculus] diamond 2070 108 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
26812026 26812026 PRJEB48872_P_NODE_370581_length_244_cov_2.868293_g354769_i0 PRJEB48872 370581 244 2.868293 6.99863492 Cervus elaphus 9860 Chordata Chordata 58.2 1.4e-7   NR XP_043734886.1 9860 g354769 i0 62.7 0.627049180327869 51 19 62.7 0 82 234 431 481 XP_043734886.1 alpha-1,6-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [Cervus elaphus] diamond 153 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
26812030 26812030 PRJEB48872_P_NODE_509441_length_191_cov_1.368421_g493629_i0 PRJEB48872 509441 191 1.368421 2.61368411 Mesocricetus auratus 10036 Chordata Chordata 48.1 2.21e-4   NR XP_040613942.1 10036 g493629 i0 44.4 0.848167539267016 54 30 84.8 0 189 28 244 297 XP_040613942.1 pre-mRNA 3' end processing protein WDR33 isoform X2 [Mesocricetus auratus] diamond 162 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Mesocricetus Mesocricetus auratus
27096661 27096661 PRJEB48872_P_NODE_216442_length_367_cov_1.570122_g200634_i0 PRJEB48872 216442 367 1.570122 5.76234774 Alexandromys fortis 100897 Chordata Chordata 46.6 0.00598   NR XP_050003558.1 100897 g200634 i0 48.8 0.572207084468665 41 21 33.5 0 71 193 220 260 XP_050003558.1 adiponectin receptor protein 1 [Alexandromys fortis] diamond 210 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Alexandromys Alexandromys fortis
27159643 27159643 PRJEB48872_P_NODE_370622_length_244_cov_2.751220_g354810_i0 PRJEB48872 370622 244 2.75122 6.7129768 Cervus canadensis 1574408 Chordata Chordata 52.4 1.55e-5   NR XP_043342340.1 1574408 g354810 i0 48.3 0.713114754098361 58 30 71.3 0 244 71 796 853 XP_043342340.1 antiviral innate immune response receptor RIG-I-like [Cervus canadensis] diamond 174 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus canadensis
27318127 27318127 PRJEB48872_P_NODE_652983_length_158_cov_1.260504_g637171_i0 PRJEB48872 652983 158 1.260504 1.99159632 Staurois parvus 386267 Chordata Chordata 51.2 7.9e-7   NR CAI9540006.1 386267 g637171 i0 57.5 0.759493670886076 40 17 75.9 0 123 4 1 40 CAI9540006.1 unnamed protein product, partial [Staurois parvus] diamond 120 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27570598 27570598 PRJEB48872_P_NODE_32324_length_1432_cov_8.974156_g23171_i0 PRJEB48872 32324 1432 8.974156 128.50991392 Mus musculus 10090 Chordata Chordata 46.6 0.0174   NR EDL30953.1 10090 g23171 i0 64.5 0.0649441340782123 31 11 6.5 0 121 29 37 67 EDL30953.1 mCG145491, isoform CRA_b, partial [Mus musculus] diamond 93 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27886323 27886323 PRJEB48872_P_NODE_292885_length_292_cov_4.683794_g277073_i0 PRJEB48872 292885 292 4.683794 13.67667848 Staurois parvus 386267 Chordata Chordata 59.7 1.46e-9   NR CAI9620946.1 386267 g277073 i0 70.3 0.38013698630137 37 11 38 0 255 145 23 59 CAI9620946.1 unnamed protein product [Staurois parvus] diamond 111 59.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28265101 28265101 PRJEB48872_P_NODE_699206_length_150_cov_1.108108_g683394_i0 PRJEB48872 699206 150 1.108108 1.662162 Ovis ammon polii x Ovis aries 2918886 Chordata Chordata 85.5 3.36e-19   NR KAI4551129.1 2918886 g683394 i0 83.3 7.54 48 8 96 0 7 150 52 99 KAI4551129.1 hypothetical protein MJG53_000307 [Ovis ammon polii x Ovis aries] diamond 1131 85.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon polii x Ovis aries
28707394 28707394 PRJEB48872_P_NODE_305067_length_284_cov_1.297959_g289255_i0 PRJEB48872 305067 284 1.297959 3.68620356 Alexandromys fortis 100897 Chordata Chordata 87 3.61e-19   NR XP_049977085.1 100897 g289255 i0 51.1 38.7253521126761 94 46 99.3 0 283 2 20 113 XP_049977085.1 40S ribosomal protein S15-like [Alexandromys fortis] diamond 10998 87.4 0.995423340961098 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Alexandromys Alexandromys fortis
28707404 28707404 PRJEB48872_P_NODE_612887_length_166_cov_0.858268_g597075_i0 PRJEB48872 612887 166 0.858268 1.42472488 Mus musculus 10090 Chordata Chordata 44.3 4.16e-4   NR EDL36965.1 10090 g597075 i0 61.1 0.650602409638554 36 11 59.6 1 100 2 1 36 EDL36965.1 mCG148278 [Mus musculus] diamond 108 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28770392 28770392 PRJEB48872_P_NODE_369407_length_245_cov_1.781553_g353595_i0 PRJEB48872 369407 245 1.781553 4.36480485 Rattus norvegicus 10116 Chordata Chordata 42.4 0.0136   NR EDM00356.1 10116 g353595 i0 77.8 0.330612244897959 27 6 33.1 0 30 110 21 47 EDM00356.1 rCG35761, isoform CRA_a [Rattus norvegicus] diamond 81 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
29464685 29464685 PRJEB48872_P_NODE_249090_length_330_cov_3.116838_g233278_i0 PRJEB48872 249090 330 3.116838 10.2855654 Mus musculus 10090 Chordata Chordata 43.5 0.0197   NR EDL01504.1 10090 g233278 i0 48.8 0.372727272727273 41 21 37.3 0 330 208 94 134 EDL01504.1 mCG145865, partial [Mus musculus] diamond 123 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
29464688 29464688 PRJEB48872_P_NODE_621510_length_164_cov_1.312000_g605698_i0 PRJEB48872 621510 164 1.312 2.15168 Mastomys coucha 35658 Chordata Chordata 42 0.0126   NR XP_031226809.1 35658 g605698 i0 58.1 1.13414634146341 31 13 56.7 0 153 61 31 61 XP_031226809.1 keratin-associated protein 10-1-like isoform X2 [Mastomys coucha] diamond 186 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mastomys Mastomys coucha
29528315 29528315 PRJEB48872_P_NODE_543510_length_182_cov_0.881119_g527698_i0 PRJEB48872 543510 182 0.881119 1.60363658 Panthera uncia 29064 Chordata Chordata 42.7 0.0167   NR XP_049490775.1 29064 g527698 i0 44.7 0.774725274725275 47 23 75.8 2 23 160 593 637 XP_049490775.1 ubiquilin-4 isoform X1 [Panthera uncia] diamond 141 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Panthera Panthera uncia
29647426 29647426 PRJEB48872_P_NODE_575810_length_174_cov_1.214815_g559998_i0 PRJEB48872 575810 174 1.214815 2.1137781 Rodentia 9989 Chordata Chordata 43.5 7.3e-4   NR EGV96219.1 10029 g559998 i0 57.1 1.39655172413793 28 12 48.3 0 91 8 26 53 EGV96219.1 hypothetical protein I79_005905 [Cricetulus griseus] diamond 243 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
30033627 30033627 PRJEB48872_P_NODE_471151_length_203_cov_1.250000_g455339_i0 PRJEB48872 471151 203 1.25 2.5375 Apodemus speciosus 105296 Chordata Chordata 44.3 0.00648   NR GAB1298491.1 105296 g455339 i0 62.5 0.472906403940887 32 12 47.3 0 121 26 554 585 GAB1298491.1 Transcription factor TFIIIB component B'' homolog [Apodemus speciosus] diamond 96 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
30791772 30791772 PRJEB48872_P_NODE_524774_length_187_cov_0.918919_g508962_i0 PRJEB48872 524774 187 0.918919 1.71837853 Engystomops pustulosus 76066 Chordata Chordata 43.1 0.0134   NR KAG8571490.1 76066 g508962 i0 49.3 7.50802139037433 67 25 99.5 2 187 2 1069 1131 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 1404 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
31329035 31329035 PRJEB48872_P_NODE_153156_length_473_cov_2.168203_g137397_i0 PRJEB48872 153156 473 2.168203 10.25560019 Apodemus speciosus 105296 Chordata Chordata 53.9 4.32e-5   NR GAB1285821.1 105296 g137397 i0 79.3 0.183932346723044 29 6 18.4 0 115 29 206 234 GAB1285821.1 BRO1 domain-containing protein BROX [Apodemus speciosus] diamond 87 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
31487415 31487415 PRJEB48872_P_NODE_303656_length_285_cov_1.219512_g287844_i0 PRJEB48872 303656 285 1.219512 3.4756092 Ovis ammon polii x Ovis aries 2918886 Chordata Chordata 124 3.04e-33   NR KAI4562102.1 2918886 g287844 i0 72.9 0.894736842105263 85 23 89.5 0 29 283 54 138 KAI4562102.1 hypothetical protein MJT46_011064 [Ovis ammon polii x Ovis aries] diamond 255 124 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon polii x Ovis aries
31708597 31708597 PRJEB48872_P_NODE_140977_length_503_cov_1.618534_g125274_i0 PRJEB48872 140977 503 1.618534 8.14122602 Capra hircus 9925 Chordata Chordata 92.4 2.95e-18   NR XP_017900741.1 9925 g125274 i0 53.5 0.602385685884692 101 45 60.2 2 350 48 214 312 XP_017900741.1 PREDICTED: collagen alpha-1(I) chain-like, partial [Capra hircus] diamond 303 92.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus
31866590 31866590 PRJEB48872_P_NODE_558377_length_178_cov_1.230216_g542565_i0 PRJEB48872 558377 178 1.230216 2.18978448 Ovis ammon polii x Ovis aries 2918886 Chordata Chordata 70.9 3.38e-13   NR KAI4561493.1 2918886 g542565 i0 97.1 1.71910112359551 34 0 57.3 1 75 176 171 203 KAI4561493.1 hypothetical protein MJG53_016547 [Ovis ammon polii x Ovis aries] diamond 306 70.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon polii x Ovis aries
32049875 32049875 PRJEB48872_P_NODE_647758_length_159_cov_1.158333_g631946_i0 PRJEB48872 647758 159 1.158333 1.8417494700000001 Chordata 7711 Chordata Chordata 71.2 1.07e-12   NR KAE8579759.1 8364 g631946 i0 58.3 57.9622641509434 48 20 90.6 0 13 156 66 113 KAE8579759.1 hypothetical protein XENTR_v10024172 [Xenopus tropicalis] diamond 9216 71.6 0.994413407821229 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
32151555 32151555 PRJEB48872_P_NODE_324298_length_271_cov_1.413793_g308486_i0 PRJEB48872 324298 271 1.413793 3.83137903 Mus musculus 10090 Chordata Chordata 47.4 2.15e-4   NR EDL11837.1 10090 g308486 i0 73.1 0.287822878228782 26 7 28.8 0 142 65 49 74 EDL11837.1 mCG1035771, isoform CRA_b [Mus musculus] diamond 78 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
32151556 32151556 PRJEB48872_P_NODE_350838_length_255_cov_1.555556_g335026_i0 PRJEB48872 350838 255 1.555556 3.9666678 Heptranchias perlo 212740 Chordata Chordata 52.4 1.74e-5   NR XP_067844505.1 212740 g335026 i0 40.3 0.905882352941176 77 46 90.6 0 22 252 62 138 XP_067844505.1 ankyrin repeat domain-containing protein 63 [Heptranchias perlo] diamond 231 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Hexanchiformes Hexanchidae Heptranchias Heptranchias perlo
32373176 32373176 PRJEB48872_P_NODE_682659_length_152_cov_2.584071_g666847_i0 PRJEB48872 682659 152 2.584071 3.92778792 Mus musculus 10090 Chordata Chordata 97.1 1.24e-24   NR BAE34520.1 10090 g666847 i0 98 0.967105263157895 49 1 96.7 0 149 3 39 87 BAE34520.1 unnamed protein product [Mus musculus] diamond 147 97.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
32594494 32594494 PRJEB48872_P_NODE_519960_length_188_cov_1.422819_g504148_i0 PRJEB48872 519960 188 1.422819 2.67489972 Ovis ammon polii 230172 Chordata Chordata 45.1 0.00221   NR KAI4529053.1 230172 g504148 i0 83.3 0.382978723404255 24 4 38.3 0 100 171 1 24 KAI4529053.1 hypothetical protein MG293_020891 [Ovis ammon polii] diamond 72 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon
32814741 32814741 PRJEB48872_P_NODE_360300_length_250_cov_1.208531_g344488_i0 PRJEB48872 360300 250 1.208531 3.0213275 Staurois parvus 386267 Chordata Chordata 41.6 0.00886   NR CAI9601297.1 386267 g344488 i0 43.2 0.528 44 23 50.4 1 233 108 3 46 CAI9601297.1 unnamed protein product [Staurois parvus] diamond 132 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;