RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB48218" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB48218 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29086327 29086327 PRJEB48218_S_NODE_10628_length_277_cov_3.741935_g9666_i0 PRJEB48218 10628 277 3.741935 10.36515995 Mercenaria mercenaria 6596 Mollusca Mollusca 63.9 1.93e-9   NR XP_053372933.1 6596 g9666 i0 42.7 1.62454873646209 75 43 81.2 0 20 244 108 182 XP_053372933.1 uncharacterized protein LOC128546441 [Mercenaria mercenaria] diamond 450 63.9 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
30823382 30823382 PRJEB48218_S_NODE_10314_length_282_cov_5.375494_g9352_i0 PRJEB48218 10314 282 5.375494 15.15889308 Haliotis asinina 109174 Mollusca Mollusca 43.9 0.0224   NR XP_067657806.1 109174 g9352 i0 35.4 1.36170212765957 65 36 68.1 2 252 61 144 203 XP_067657806.1 uncharacterized protein [Haliotis asinina] diamond 384 43.9 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis asinina
31550698 31550698 PRJEB48218_S_NODE_27276_length_163_cov_2.298507_g26314_i0 PRJEB48218 27276 163 2.298507 3.74656641 Argopecten irradians 31199 Mollusca Mollusca 42 0.0201   NR XP_069108365.1 31199 g26314 i0 45 0.736196319018405 40 21 73.6 1 26 145 11 49 XP_069108365.1 uncharacterized protein [Argopecten irradians] diamond 120 42 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;