RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJEB48218" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJEB48218 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20116775 20116775 PRJEB48218_S_NODE_11576_length_264_cov_2.046809_g10614_i0 PRJEB48218 11576 264 2.046809 5.40357576 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 162 3.6699999999999997e-47   NR HZP25654.1 2026734 g10614 i0 85.1 0.988636363636364 87 13 98.9 0 2 262 10 96 HZP25654.1 succinate dehydrogenase iron-sulfur subunit [Dehalococcoidia bacterium] diamond 261 162 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
28328293 28328293 PRJEB48218_S_NODE_22566_length_190_cov_1.925466_g21604_i0 PRJEB48218 22566 190 1.925466 3.6583854 Chloroflexota bacterium 2026724 Bacteria Bacteria 88.6 1.2e-18   NR MCC7366880.1 2026724 g21604 i0 80 0.868421052631579 55 11 86.8 0 24 188 314 368 MCC7366880.1 hypothetical protein [Chloroflexota bacterium] diamond 165 88.6 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29275477 29275477 PRJEB48218_S_NODE_25949_length_169_cov_2.700000_g24987_i0 PRJEB48218 25949 169 2.7 4.563 Chloroflexia bacterium 2448782 Bacteria Bacteria 63.9 3.34e-11   NR HUP27325.1 2448782 g24987 i0 73.7 7.77514792899408 38 10 67.5 0 114 1 24 61 HUP27325.1 ABC transporter permease [Chloroflexia bacterium] diamond 1314 63.9 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium
32246799 32246799 PRJEB48218_S_NODE_23458_length_183_cov_3.967532_g22496_i0 PRJEB48218 23458 183 3.967532 7.26058356 Anaerolineales bacterium 2073117 Bacteria Bacteria 75.9 3.44e-14   NR MCA9994345.1 2073117 g22496 i0 55.9 2.88524590163934 59 26 96.7 0 179 3 835 893 MCA9994345.1 PKD domain-containing protein [Anaerolineales bacterium] diamond 528 75.9 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
32846190 32846190 PRJEB48218_S_NODE_22360_length_191_cov_3.475309_g21398_i0 PRJEB48218 22360 191 3.475309 6.63784019 Chloroflexota bacterium 2026724 Bacteria Bacteria 43.9 0.00748   NR PWT76956.1 2026724 g21398 i0 36.4 0.863874345549738 55 35 86.4 0 7 171 823 877 PWT76956.1 MAG: hypothetical protein C5B60_03505 [Chloroflexota bacterium] diamond 165 43.9 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;