RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB4632" and tax_kingdom = "Bacillati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJEB4632 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28707377 28707377 PRJEB4632_P_NODE_1047_length_227_cov_2.090909_g1009_i0 PRJEB4632 1047 227 2.090909 4.74636343 Actinacidiphila rubida 310780 Bacteria Bacteria 42.4 0.00936   NR WP_176735615.1 310780 g1009 i0 42.6 1.4273127753304 54 28 71.4 1 203 42 28 78 WP_176735615.1 NAD(P)-binding domain-containing protein, partial [Actinacidiphila rubida] diamond 324 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Actinacidiphila Actinacidiphila rubida
29338857 29338857 PRJEB4632_P_NODE_949_length_243_cov_0.905882_g911_i0 PRJEB4632 949 243 0.905882 2.20129326 Cellulomonas humilata 144055 Bacteria Bacteria 105 3.03e-24   NR WP_175347822.1 144055 g911 i0 95.2 0.765432098765432 62 3 76.5 0 2 187 689 750 WP_175347822.1 glycogen debranching protein GlgX [Cellulomonas humilata] diamond 186 105 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas humilata
29843940 29843940 PRJEB4632_P_NODE_791_length_250_cov_0.870056_g753_i0 PRJEB4632 791 250 0.870056 2.17514 uncultured Quadrisphaera sp. 904978 Bacteria Bacteria 43.1 0.0299   NR CAA9422658.1 904978 g753 i0 45.6 0.948 79 35 87.6 4 238 20 247 323 CAA9422658.1 MAG: 2-isopropylmalate synthase, partial [uncultured Quadrisphaera sp.] diamond 237 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae Quadrisphaera uncultured Quadrisphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;