RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB4632" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJEB4632 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12815029 12815029 PRJEB4632_P_NODE_851_length_247_cov_0.885057_g813_i0 PRJEB4632 851 247 0.885057 2.18609079 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 162 4.85e-44   NR CAB9507048.1 568900 g813 i0 95.1 0.995951417004049 82 4 99.6 0 247 2 366 447 CAB9507048.1 Carbamoyl-phosphate synthase large chain [Seminavis robusta] diamond 246 162 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
29938832 29938832 PRJEB4632_P_NODE_591_length_289_cov_1.421296_g553_i0 PRJEB4632 591 289 1.421296 4.10754544 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 50.8 9.83e-5   NR CAB9521913.1 568900 g553 i0 51.2 1.79584775086505 43 21 44.6 0 288 160 13 55 CAB9521913.1 expressed unknown protein [Seminavis robusta] diamond 519 50.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
31708570 31708570 PRJEB4632_P_NODE_397_length_351_cov_1.046763_g359_i0 PRJEB4632 397 351 1.046763 3.67413813 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 63.5 6.22e-9   NR CAB9518049.1 568900 g359 i0 45.6 0.581196581196581 68 36 58.1 1 346 143 148 214 CAB9518049.1 collagen, type [Seminavis robusta] diamond 204 63.5 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;