RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB43370" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB43370 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26621862 26621862 PRJEB43370_P_NODE_7761_length_169_cov_0.866667_g7718_i0 PRJEB43370 7761 169 0.866667 1.46466723 Terrimicrobium sacchariphilum 690879 Bacteria Bacteria 47.4 3.04e-4   NR WP_075079027.1 690879 g7718 i0 58.8 0.603550295857988 34 14 60.4 0 167 66 290 323 WP_075079027.1 hypothetical protein [Terrimicrobium sacchariphilum] diamond 102 47.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium Terrimicrobium sacchariphilum
27627250 27627250 PRJEB43370_P_NODE_4364_length_214_cov_1.260606_g4321_i0 PRJEB43370 4364 214 1.260606 2.69769684 Bacteria 2 Bacteria Bacteria 101 1.0399999999999997e-23   NR MFA5258231.1 2026772 g4321 i0 65.7 5.60747663551402 67 23 93.9 0 202 2 3 69 MFA5258231.1 malate dehydrogenase [Opitutales bacterium] diamond 1200 101 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
28770358 28770358 PRJEB43370_P_NODE_8947_length_166_cov_0.888889_g8904_i0 PRJEB43370 8947 166 0.888889 1.47555574 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 79.7 3.44e-16   NR MDB4508061.1 2562705 g8904 i0 58.2 1.96987951807229 55 23 99.4 0 2 166 73 127 MDB4508061.1 endonuclease/exonuclease/phosphatase family protein [Akkermansiaceae bacterium] diamond 327 79.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;