RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB43370" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJEB43370 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27886284 27886284 PRJEB43370_P_NODE_10565_length_162_cov_1.840708_g10522_i0 PRJEB43370 10565 162 1.840708 2.98194696 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 58.5 3.05e-8   NR XP_013760592.1 461836 g10522 i0 77.1 3.55555555555556 35 8 64.8 0 106 2 43 77 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 576 58.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31423872 31423872 PRJEB43370_P_NODE_816_length_483_cov_2.557604_g773_i0 PRJEB43370 816 483 2.557604 12.35322732 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 86.3 4.35e-18   NR XP_013758370.1 461836 g773 i0 39.6 0.863354037267081 139 77 83.9 4 466 62 6 141 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 417 86.3 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32214875 32214875 PRJEB43370_P_NODE_4118_length_219_cov_1.223529_g4075_i0 PRJEB43370 4118 219 1.223529 2.67952851 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 84 7.54e-17   NR XP_013759386.1 461836 g4075 i0 52.9 0.958904109589041 70 33 95.9 0 218 9 303 372 XP_013759386.1 peptidase M28 [Thecamonas trahens ATCC 50062] diamond 210 84 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;