RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJEB41113" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJEB41113 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27760340 27760340 PRJEB41113_S_NODE_5504_length_184_cov_2.312925_g5495_i0 PRJEB41113 5504 184 2.312925 4.255782 Spirochaetota bacterium 2202144 Bacteria Bacteria 45.1 0.00256   NR MFA5519240.1 2202144 g5495 i0 63.2 0.619565217391304 38 14 62 0 70 183 11 48 MFA5519240.1 hypothetical protein [Spirochaetota bacterium] diamond 114 45.1 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
28328243 28328243 PRJEB41113_S_NODE_4266_length_192_cov_5.509677_g4257_i0 PRJEB41113 4266 192 5.509677 10.57857984 Treponema sp. 166 Bacteria Bacteria 56.2 2.14e-8   NR MBR1722813.1 166 g4257 i0 56.4 0.609375 39 17 60.9 0 71 187 1 39 MBR1722813.1 hypothetical protein [Treponema sp.] diamond 117 56.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
28960074 28960074 PRJEB41113_S_NODE_668_length_286_cov_1.333333_g659_i0 PRJEB41113 668 286 1.333333 3.81333238 Spirochaetota bacterium 2202144 Bacteria Bacteria 89.4 2.52e-19   NR HNT13100.1 2202144 g659 i0 51.2 0.881118881118881 84 41 88.1 0 24 275 159 242 HNT13100.1 hypothetical protein [Spirochaetota bacterium] diamond 252 89.4 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
30191317 30191317 PRJEB41113_S_NODE_6512_length_177_cov_3.735714_g6503_i0 PRJEB41113 6512 177 3.735714 6.61221378 Spirochaetota bacterium 2202144 Bacteria Bacteria 75.9 2.39e-14   NR MBN2323266.1 2202144 g6503 i0 70.4 0.915254237288136 54 16 91.5 0 2 163 290 343 MBN2323266.1 TIR domain-containing protein [Spirochaetota bacterium] diamond 162 75.9 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
31107550 31107550 PRJEB41113_S_NODE_6475_length_177_cov_8.600000_g6466_i0 PRJEB41113 6475 177 8.6 15.222 Spirochaetaceae bacterium 1898206 Bacteria Bacteria 55.5 4.75e-7   NR MBQ5781549.1 1898206 g6466 i0 92.9 1.42372881355932 28 2 47.5 0 89 172 1 28 MBQ5781549.1 ATP-binding protein [Spirochaetaceae bacterium] diamond 252 55.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae   Spirochaetaceae bacterium
31170651 31170651 PRJEB41113_S_NODE_7875_length_169_cov_3.363636_g7866_i0 PRJEB41113 7875 169 3.363636 5.68454484 uncultured Treponema sp. 162155 Bacteria Bacteria 56.2 2.83e-8   NR WP_315450830.1 162155 g7866 i0 91.2 0.603550295857988 34 3 60.4 0 169 68 29 62 WP_315450830.1 hypothetical protein, partial [uncultured Treponema sp.] diamond 102 56.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema uncultured Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;