RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB41113" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB41113 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26685135 26685135 PRJEB41113_S_NODE_2241_length_221_cov_5.722826_g2232_i0 PRJEB41113 2241 221 5.722826 12.64744546 Helicobacter pylori 210 Bacteria Bacteria 42 0.00772   NR GAA9192772.1 210 g2232 i0 85 0.271493212669683 20 3 27.1 0 69 128 2 21 GAA9192772.1 hypothetical protein Kyoto193A_3750 [Helicobacter pylori] diamond 60 42 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30286655 30286655 PRJEB41113_S_NODE_5392_length_185_cov_1.148649_g5383_i0 PRJEB41113 5392 185 1.148649 2.12500065 Helicobacter pylori 210 Bacteria Bacteria 57 1.39e-8   NR GAA9128289.1 210 g5383 i0 75 0.583783783783784 36 9 58.4 0 165 58 53 88 GAA9128289.1 hypothetical protein Kyoto190A_1620 [Helicobacter pylori] diamond 108 57 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32625688 32625688 PRJEB41113_S_NODE_9240_length_162_cov_35.472000_g9231_i0 PRJEB41113 9240 162 35.472 57.46464 Helicobacter pylori 210 Bacteria Bacteria 44.7 3.67e-4   NR GAA6820949.1 210 g9231 i0 48.8 0.759259259259259 41 14 63 1 162 61 2 42 GAA6820949.1 hypothetical protein Kyoto200A_3790 [Helicobacter pylori] diamond 123 44.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;