RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB41113" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJEB41113 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28359766 28359766 PRJEB41113_S_NODE_7566_length_171_cov_1.888060_g7557_i0 PRJEB41113 7566 171 1.88806 3.2285826 uncultured Fusobacterium sp. 159267 Bacteria Bacteria 109 8.88e-27   NR WP_177162329.1 159267 g7557 i0 98.1 0.912280701754386 52 1 91.2 0 15 170 6 57 WP_177162329.1 hypothetical protein [uncultured Fusobacterium sp.] diamond 156 109 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium uncultured Fusobacterium sp.
29212618 29212618 PRJEB41113_S_NODE_12369_length_154_cov_1.854701_g12360_i0 PRJEB41113 12369 154 1.854701 2.85623954 Fusobacterium sp. 68766 Bacteria Bacteria 89 5.78e-19   NR MFR3298734.1 68766 g12360 i0 93.3 0.876623376623377 45 3 87.7 0 1 135 454 498 MFR3298734.1 patatin-like phospholipase family protein [Fusobacterium sp.] diamond 135 89 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
32468146 32468146 PRJEB41113_S_NODE_13879_length_152_cov_1.626087_g13870_i0 PRJEB41113 13879 152 1.626087 2.47165224 Streptobacillus moniliformis 34105 Bacteria Bacteria 81.3 1.29e-16   NR WP_064580942.1 34105 g13870 i0 97.2 0.710526315789474 36 1 71.1 0 110 3 29 64 WP_064580942.1 hypothetical protein [Streptobacillus moniliformis] diamond 108 81.3 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;