RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB39643" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJEB39643 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1332609 1332609 PRJEB39643_P_NODE_67642_length_277_cov_1.509804_g67449_i0 PRJEB39643 67642 277 1.509804 4.18215708 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 172 6.5499999999999996e-52   NR WP_053393272.1 712357 g67449 i0 93.4 0.985559566787004 91 6 98.6 0 275 3 55 145 WP_053393272.1 response regulator transcription factor [Leptotrichia sp. oral taxon 212] diamond 273 172 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
26875491 26875491 PRJEB39643_P_NODE_33841_length_319_cov_3.130081_g33648_i0 PRJEB39643 33841 319 3.130081 9.98495839 Fusobacteriota bacterium 2060921 Bacteria Bacteria 123 1.13e-30   NR RUA08401.1 2060921 g33648 i0 56.2 0.987460815047022 105 46 98.7 0 319 5 33 137 RUA08401.1 MAG: pyruvate kinase PykF [Fusobacteriota bacterium] diamond 315 123 1 Bacteria   Fusobacteriati Fusobacteriota         Fusobacteriota bacterium
28479634 28479634 PRJEB39643_P_NODE_104326_length_259_cov_1.655914_g104133_i0 PRJEB39643 104326 259 1.655914 4.28881726 Leptotrichia 32067 Bacteria Bacteria 134 1.66e-34   NR WP_006804437.1 157688 g104133 i0 77.9 1.99227799227799 86 19 99.6 0 2 259 396 481 WP_006804437.1 DNA primase family protein [Leptotrichia hofstadii] diamond 516 134 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
32814597 32814597 PRJEB39643_P_NODE_139300_length_245_cov_1.790698_g139107_i0 PRJEB39643 139300 245 1.790698 4.3872101 Leptotrichia sp. oral taxon 215 712359 Bacteria Bacteria 159 2.5e-47   NR WP_021766073.1 712359 g139107 i0 100 0.991836734693878 81 0 99.2 0 1 243 38 118 WP_021766073.1 DUF3298 domain-containing protein [Leptotrichia sp. oral taxon 215] diamond 243 159 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 215

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;