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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJEB39269" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB39269 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15359200 15359200 PRJEB39269_P_NODE_29993_length_253_cov_2.074766_g29588_i0 PRJEB39269 29993 253 2.074766 5.24915798 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 79.3 1.9e-15   NR HUK21556.1 2448054 g29588 i0 65 0.711462450592885 60 21 71.1 0 216 37 100 159 HUK21556.1 FAD:protein FMN transferase [Gemmatimonadales bacterium] diamond 180 79.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
26716410 26716410 PRJEB39269_P_NODE_86741_length_153_cov_3.201754_g86336_i0 PRJEB39269 86741 153 3.201754 4.89868362 Longimicrobium sp. 2029185 Bacteria Bacteria 68.6 8.35e-12   NR HEU4561124.1 2029185 g86336 i0 74.5 2.80392156862745 47 12 92.2 0 2 142 297 343 HEU4561124.1 ATP-dependent DNA ligase [Longimicrobium sp.] diamond 429 68.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
26875434 26875434 PRJEB39269_P_NODE_64721_length_172_cov_1.233083_g64316_i0 PRJEB39269 64721 172 1.233083 2.12090276 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 97.8 2.47e-22   NR HTR21421.1 2448054 g64316 i0 89.5 0.994186046511628 57 6 99.4 0 172 2 249 305 HTR21421.1 acyl-CoA dehydrogenase [Gemmatimonadales bacterium] diamond 171 97.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27444495 27444495 PRJEB39269_P_NODE_58463_length_180_cov_1.879433_g58058_i0 PRJEB39269 58463 180 1.879433 3.3829794 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 79.3 1.57e-15   NR MCI0435378.1 2026742 g58058 i0 67.2 2.9 58 19 96.7 0 2 175 42 99 MCI0435378.1 enoyl-CoA hydratase-related protein [Gemmatimonadota bacterium] diamond 522 79.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27910970 27910970 PRJEB39269_P_NODE_45225_length_204_cov_1.351515_g44820_i0 PRJEB39269 45225 204 1.351515 2.7570906 Bacteria 2 Bacteria Bacteria 94.7 1.08e-20   NR HEY7529619.1 2026742 g44820 i0 78.1 3.48529411764706 64 14 94.1 0 3 194 771 834 HEY7529619.1 heavy metal translocating P-type ATPase [Gemmatimonadota bacterium] diamond 711 95.5 0.991623036649215 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30886453 30886453 PRJEB39269_P_NODE_47874_length_198_cov_1.849057_g47469_i0 PRJEB39269 47874 198 1.849057 3.66113286 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 120 3.34e-33   NR MDQ3556373.1 2026742 g47469 i0 84.6 5.90909090909091 65 10 98.5 0 196 2 41 105 MDQ3556373.1 cupredoxin domain-containing protein [Gemmatimonadota bacterium] diamond 1170 120 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30981418 30981418 PRJEB39269_P_NODE_82534_length_157_cov_1.211864_g82129_i0 PRJEB39269 82534 157 1.211864 1.90262648 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 91.3 1.56e-20   NR HEY9515683.1 2026741 g82129 i0 74.5 2.92356687898089 51 13 97.5 0 155 3 209 259 HEY9515683.1 methyltransferase domain-containing protein [Gemmatimonadaceae bacterium] diamond 459 91.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31803201 31803201 PRJEB39269_P_NODE_88737_length_152_cov_1.380531_g88332_i0 PRJEB39269 88737 152 1.380531 2.09840712 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 83.6 1.97e-18   NR HEX7595213.1 2026741 g88332 i0 88 0.986842105263158 50 6 98.7 0 150 1 76 125 HEX7595213.1 plasmid mobilization relaxosome protein MobC [Gemmatimonadaceae bacterium] diamond 150 83.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31954858 31954858 PRJEB39269_P_NODE_66857_length_170_cov_3.000000_g66452_i0 PRJEB39269 66857 170 3 5.1 Pseudomonadati 3379134 Bacteria Bacteria 48.5 1.15e-4   NR HKV71433.1 2448054 g66452 i0 55 8.43529411764706 40 18 70.6 0 4 123 158 197 HKV71433.1 ABC transporter ATP-binding protein [Gemmatimonadales bacterium] diamond 1434 48.9 0.991820040899796 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32113243 32113243 PRJEB39269_P_NODE_83598_length_156_cov_1.401709_g83193_i0 PRJEB39269 83598 156 1.401709 2.18666604 Pseudomonadati 3379134 Bacteria Bacteria 55.1 5.09e-7   NR HZF67855.1 2510638 g83193 i0 81.5 4.55769230769231 27 5 51.9 0 156 76 344 370 HZF67855.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) [Gemmatirosa sp.] diamond 711 55.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
32214732 32214732 PRJEB39269_P_NODE_62338_length_175_cov_1.301471_g61933_i0 PRJEB39269 62338 175 1.301471 2.27757425 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 77.4 3.22e-15   NR HVD62548.1 2026741 g61933 i0 64.9 2.93142857142857 57 20 97.7 0 3 173 64 120 HVD62548.1 methyltransferase domain-containing protein [Gemmatimonadaceae bacterium] diamond 513 77.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;