RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJEB39269" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB39269 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2606990 2606990 PRJEB39269_P_NODE_66083_length_170_cov_4.854962_g65678_i0 PRJEB39269 66083 170 4.8549620000000004 8.2534354 Naviculales 38748 SAR_Eukaryotes SAR_Eukaryotes 77.4 2.38e-15   NR XP_002177120.1 556484 g65678 i0 47.7 7.76470588235294 88 12 95.3 1 9 170 1 88 XP_002177120.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1] diamond 1320 77.8 0.994858611825193 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
28139078 28139078 PRJEB39269_P_NODE_80565_length_158_cov_2.823529_g80160_i0 PRJEB39269 80565 158 2.823529 4.46117582 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 46.2 6.91e-4   NR KAI2500240.1 210448 g80160 i0 84.6 0.493670886075949 26 4 49.4 0 157 80 244 269 KAI2500240.1 Glyceraldehyde-3-phosphate dehydrogenase [Fragilaria crotonensis] diamond 78 46.2 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;