RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJEB39269" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB39269 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30601954 30601954 PRJEB39269_P_NODE_79473_length_159_cov_1.708333_g79068_i0 PRJEB39269 79473 159 1.708333 2.71624947 Halotydeus destructor 2874060 Arthropoda Arthropoda 42.4 0.0161   NR KAI1303014.1 2874060 g79068 i0 38.1 2.24528301886792 42 23 73.6 1 155 39 174 215 KAI1303014.1 hypothetical protein HDE_02276 [Halotydeus destructor] diamond 357 42.4 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Trombidiformes Penthaleidae Halotydeus Halotydeus destructor
31076120 31076120 PRJEB39269_P_NODE_85335_length_154_cov_4.156522_g84930_i0 PRJEB39269 85335 154 4.156522 6.40104388 Portunus trituberculatus 210409 Arthropoda Arthropoda 44.7 0.00233   NR XP_045114004.1 210409 g84930 i0 63.9 1.28571428571429 36 10 64.3 1 100 2 252 287 XP_045114004.1 neurofilament medium polypeptide-like [Portunus trituberculatus] diamond 198 44.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Portunidae Portunus Portunus trituberculatus
32846055 32846055 PRJEB39269_P_NODE_64640_length_172_cov_1.541353_g64235_i0 PRJEB39269 64640 172 1.541353 2.65112716 Amblyomma americanum 6943 Arthropoda Arthropoda 46.2 8.67e-4   NR KAK8780335.1 6943 g64235 i0 67.9 5.40697674418605 28 9 48.8 0 89 172 6 33 KAK8780335.1 hypothetical protein V5799_018325 [Amblyomma americanum] diamond 930 46.2 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Ixodida Ixodidae Amblyomma Amblyomma americanum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;