RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJEB36940" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB36940 · 12 ✖

analysis 1

  • diamond · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
988982 988982 PRJEB36940_P_NODE_7041_length_325_cov_2.547619_g6912_i0 PRJEB36940 7041 325 2.547619 8.27976175 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 76.6 8.59e-14   NR RYD71398.1 2026800 g6912 i0 37.5 0.96 104 64 96 1 13 324 26 128 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 312 76.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
8983872 8983872 PRJEB36940_P_NODE_288_length_1349_cov_4.984326_g228_i0 PRJEB36940 288 1349 4.984326 67.23855774 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 290 8.76e-91   NR RYD71398.1 2026800 g228 i0 45.1 0.789473684210526 355 182 77.6 6 1253 207 14 361 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 1065 290 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26621740 26621740 PRJEB36940_P_NODE_9101_length_288_cov_1.502326_g8972_i0 PRJEB36940 9101 288 1.502326 4.32669888 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 75.9 7.5e-15   NR RYD79446.1 2026800 g8972 i0 57.1 0.729166666666667 70 30 72.9 0 211 2 3 72 RYD79446.1 MAG: hypothetical protein EOP84_13030, partial [Verrucomicrobiaceae bacterium] diamond 210 75.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26811821 26811821 PRJEB36940_P_NODE_13441_length_249_cov_0.880682_g13312_i0 PRJEB36940 13441 249 0.880682 2.19289818 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 86.7 1.3e-17   NR HEX7861274.1 2499141 g13312 i0 100 0.518072289156627 43 0 51.8 0 129 1 1 43 HEX7861274.1 DUF1800 domain-containing protein [Verrucomicrobiia bacterium] diamond 129 86.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
26969903 26969903 PRJEB36940_P_NODE_14742_length_245_cov_0.906977_g14613_i0 PRJEB36940 14742 245 0.906977 2.22209365 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 100 7.080000000000001e-26   NR RYD81271.1 2026800 g14613 i0 66.2 0.906122448979592 74 20 84.5 2 208 2 5 78 RYD81271.1 MAG: hypothetical protein EOP84_11270 [Verrucomicrobiaceae bacterium] diamond 222 100 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29370237 29370237 PRJEB36940_P_NODE_6169_length_346_cov_1.417582_g6040_i0 PRJEB36940 6169 346 1.417582 4.90483372 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 65.1 1.86e-9   NR MBL9134505.1 2026801 g6040 i0 38.9 2.69653179190751 108 57 92.8 2 345 25 927 1026 MBL9134505.1 S8 family serine peptidase [Verrucomicrobiales bacterium] diamond 933 65.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
29780592 29780592 PRJEB36940_P_NODE_4211_length_416_cov_2.705539_g4082_i0 PRJEB36940 4211 416 2.705539 11.25504224 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 223 9.67e-70   NR RYD81270.1 2026800 g4082 i0 73.9 0.995192307692308 138 36 99.5 0 415 2 169 306 RYD81270.1 MAG: hypothetical protein EOP84_11265, partial [Verrucomicrobiaceae bacterium] diamond 414 223 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
30096394 30096394 PRJEB36940_P_NODE_2512_length_535_cov_2.731602_g2386_i0 PRJEB36940 2512 535 2.731602 14.6140707 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 143 1.0199999999999998e-37   NR RYD71398.1 2026800 g2386 i0 54.9 0.745794392523364 133 59 74 1 501 106 229 361 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 399 143 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
30570158 30570158 PRJEB36940_P_NODE_12693_length_251_cov_0.876404_g12564_i0 PRJEB36940 12693 251 0.876404 2.19977404 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 112 4.71e-29   NR MBA3883211.1 2201154 g12564 i0 82.5 0.752988047808765 63 11 75.3 0 2 190 126 188 MBA3883211.1 RNA polymerase sigma factor [Chthoniobacterales bacterium] diamond 189 112 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
31803169 31803169 PRJEB36940_P_NODE_2897_length_497_cov_1.205189_g2770_i0 PRJEB36940 2897 497 1.205189 5.98978933 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 226 5.49e-69   NR RYD76251.1 2026800 g2770 i0 64.8 0.995975855130785 165 58 99.6 0 496 2 140 304 RYD76251.1 MAG: hypothetical protein EOP84_17160, partial [Verrucomicrobiaceae bacterium] diamond 495 226 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
32183104 32183104 PRJEB36940_P_NODE_258_length_1400_cov_6.782216_g204_i0 PRJEB36940 258 1400 6.782216 94.951024 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 440 8.18e-150   NR RYD65414.1 2026800 g204 i0 77 0.606428571428571 283 63 60.6 1 1067 219 56 336 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 849 440 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
32877519 32877519 PRJEB36940_P_NODE_3860_length_434_cov_2.997230_g3731_i0 PRJEB36940 3860 434 2.99723 13.0079782 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.4 0.0385   NR MBV9671622.1 2026799 g3731 i0 37 0.317972350230415 46 29 31.8 0 261 398 8 53 MBV9671622.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 138 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;