RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJEB36940" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB36940 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9917171 9917171 PRJEB36940_P_NODE_15068_length_244_cov_0.912281_g14939_i0 PRJEB36940 15068 244 0.912281 2.22596564 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 162 1.14e-47   NR HEX7978956.1 2026741 g14939 i0 97.5 0.995901639344262 81 2 99.6 0 1 243 51 131 HEX7978956.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [Gemmatimonadaceae bacterium] diamond 243 162 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27665365 27665365 PRJEB36940_P_NODE_7104_length_324_cov_1.406375_g6975_i0 PRJEB36940 7104 324 1.406375 4.556655 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 44.3 0.0259   NR HEV2018235.1 2026741 g6975 i0 40.4 0.527777777777778 57 29 48.1 1 273 118 8 64 HEV2018235.1 PQQ-dependent sugar dehydrogenase [Gemmatimonadaceae bacterium] diamond 171 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29559474 29559474 PRJEB36940_P_NODE_1090_length_801_cov_7.211538_g975_i0 PRJEB36940 1090 801 7.211538 57.76441938 Longimicrobium sp. 2029185 Bacteria Bacteria 121 1.84e-29   NR HEX2080112.1 2029185 g975 i0 36.8 3.98876404494382 220 121 80.5 8 712 68 2 208 HEX2080112.1 hypothetical protein [Longimicrobium sp.] diamond 3195 121 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32499639 32499639 PRJEB36940_P_NODE_14439_length_246_cov_0.901734_g14310_i0 PRJEB36940 14439 246 0.901734 2.21826564 Longimicrobiales bacterium 2910168 Bacteria Bacteria 119 6.86e-33   NR HEX6695017.1 2910168 g14310 i0 82.1 0.817073170731707 67 12 81.7 0 2 202 49 115 HEX6695017.1 hypothetical protein [Longimicrobiales bacterium] diamond 201 119 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;