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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJEB36940" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB36940 · 31 ✖

analysis 1

  • diamond · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12810250 12810250 PRJEB36940_P_NODE_1311_length_727_cov_2.487768_g1192_i0 PRJEB36940 1311 727 2.487768 18.08607336 Metazoa 33208 Chordata Chordata 246 1.59e-74   NR MBZ3888181.1 30640 g1192 i0 51.5 43.7744154057772 241 114 99.4 1 724 2 9 246 MBZ3888181.1 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Sciurus carolinensis] diamond 31824 248 0.991935483870968 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Sciurus Sciurus carolinensis
12810262 12810262 PRJEB36940_P_NODE_14691_length_245_cov_1.348837_g14562_i0 PRJEB36940 14691 245 1.348837 3.30465065 Metazoa 33208 Chordata Chordata 131 2.91e-33   NR XP_039253757.1 7725 g14562 i0 71.6 243.808163265306 81 23 99.2 0 243 1 1421 1501 XP_039253757.1 helicase domino-like [Styela clava] diamond 59733 132 0.992424242424242 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
14084970 14084970 PRJEB36940_P_NODE_10872_length_267_cov_1.268041_g10743_i0 PRJEB36940 10872 267 1.268041 3.38566947 Metazoa 33208 Chordata Chordata 92.4 1.21e-21   NR XP_040193074.1 8407 g10743 i0 52.9 6.68539325842697 85 35 95.5 1 262 8 11 90 XP_040193074.1 microsomal glutathione S-transferase 3-like [Rana temporaria] diamond 1785 93.2 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
20457554 20457554 PRJEB36940_P_NODE_15377_length_243_cov_1.476471_g15248_i0 PRJEB36940 15377 243 1.476471 3.58782453 Clavelina lepadiformis 159417 Chordata Chordata 73.6 2.99e-13   NR CAK8698492.1 159417 g15248 i0 66.7 1.18518518518519 48 16 59.3 0 100 243 8 55 CAK8698492.1 unnamed protein product [Clavelina lepadiformis] diamond 288 73.6 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
23008903 23008903 PRJEB36940_P_NODE_7899_length_308_cov_0.991489_g7770_i0 PRJEB36940 7899 308 0.991489 3.05378612 Latimeria chalumnae 7897 Chordata Chordata 109 3.3100000000000004e-26   NR XP_005993364.1 7897 g7770 i0 61.7 0.788961038961039 81 31 78.9 0 244 2 2 82 XP_005993364.1 replication factor C subunit 5 [Latimeria chalumnae] diamond 243 109 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
26716380 26716380 PRJEB36940_P_NODE_661_length_1013_cov_3.890426_g564_i0 PRJEB36940 661 1013 3.890426 39.41001538 Styela clava 7725 Chordata Chordata 387 6.88e-131   NR XP_039263546.1 7725 g564 i0 56.3 2.84600197433366 323 140 95.7 1 972 4 7 328 XP_039263546.1 cathepsin B-like [Styela clava] diamond 2883 387 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
26868753 26868753 PRJEB36940_P_NODE_13461_length_249_cov_0.880682_g13332_i0 PRJEB36940 13461 249 0.880682 2.19289818 Chordata 7711 Chordata Chordata 76.3 5.73e-14   NR ETE63231.1 8665 g13332 i0 48.1 25.6987951807229 79 41 95.2 0 12 248 290 368 ETE63231.1 Serine palmitoyltransferase 1 [Ophiophagus hannah] diamond 6399 76.3 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah
27033271 27033271 PRJEB36940_P_NODE_4162_length_418_cov_8.211594_g4033_i0 PRJEB36940 4162 418 8.211594 34.32446292 Branchiostoma floridae 7739 Chordata Chordata 169 4.05e-51   NR XP_035667477.1 7739 g4033 i0 69.5 43.6866028708134 118 36 84.7 0 20 373 1 118 XP_035667477.1 40S ribosomal protein S17 [Branchiostoma floridae] diamond 18261 169 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
27753541 27753541 PRJEB36940_P_NODE_12164_length_253_cov_1.288889_g12035_i0 PRJEB36940 12164 253 1.288889 3.26088917 Anura 8342 Chordata Chordata 116 5.59e-28   NR XP_053576824.1 8345 g12035 i0 61 6.84189723320158 82 29 97.2 1 246 1 396 474 XP_053576824.1 urocanate hydratase [Bombina bombina] diamond 1731 117 0.991452991452991 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
27980971 27980971 PRJEB36940_P_NODE_15705_length_242_cov_2.278107_g15576_i0 PRJEB36940 15705 242 2.278107 5.51301894 Ciona intestinalis 7719 Chordata Chordata 73.2 6.93e-13   NR XP_002120963.1 7719 g15576 i0 62.2 0.557851239669422 45 17 55.8 0 83 217 565 609 XP_002120963.1 alpha-amylase 2-like [Ciona intestinalis] diamond 135 73.2 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
28353212 28353212 PRJEB36940_P_NODE_4826_length_388_cov_2.028571_g4697_i0 PRJEB36940 4826 388 2.028571 7.87085548 Metazoa 33208 Chordata Chordata 228 5.469999999999999e-73   NR CAL5924510.1 7750 g4697 i0 79.8 75.8041237113402 129 26 99.7 0 387 1 2 130 CAL5924510.1 unnamed protein product [Lampetra planeri] diamond 29412 229 0.995633187772926 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
28479622 28479622 PRJEB36940_P_NODE_11506_length_260_cov_1.518717_g11377_i0 PRJEB36940 11506 260 1.518717 3.9486642 root 1 Root_unresolved Root_unresolved 176 3.56e-50   NR XP_030110853.2 10090 g11377 i0 98.8 13.8461538461538 86 1 99.2 0 260 3 108 193 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 3600 177 0.994350282485876 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28644131 28644131 PRJEB36940_P_NODE_12767_length_251_cov_0.876404_g12638_i0 PRJEB36940 12767 251 0.876404 2.19977404 Elephantulus edwardii 28737 Chordata Chordata 47.8 7.09e-4   NR XP_006892893.1 28737 g12638 i0 28.9 4.76892430278884 83 56 99.2 1 2 250 137 216 XP_006892893.1 PREDICTED: LOW QUALITY PROTEIN: von Willebrand factor A domain-containing protein 5A-like [Elephantulus edwardii] diamond 1197 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Macroscelidea Macroscelididae Elephantulus Elephantulus edwardii
28700680 28700680 PRJEB36940_P_NODE_9027_length_289_cov_1.629630_g8898_i0 PRJEB36940 9027 289 1.62963 4.7096307 Metazoa 33208 Chordata Chordata 80.9 2.67e-15   NR KAJ1113740.1 8319 g8898 i0 50.7 16.0795847750865 75 35 77.9 1 226 2 648 720 KAJ1113740.1 hypothetical protein NDU88_001982 [Pleurodeles waltl] diamond 4647 81.6 0.991421568627451 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
29149541 29149541 PRJEB36940_P_NODE_16609_length_208_cov_4.600000_g16480_i0 PRJEB36940 16609 208 4.6 9.568 Erythrolamprus reginae 121349 Chordata Chordata 47.4 5.63e-4   NR XP_070585748.1 121349 g16480 i0 40 1.73076923076923 60 36 86.5 0 28 207 1 60 XP_070585748.1 importin-4 isoform X3 [Erythrolamprus reginae] diamond 360 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dipsadidae Erythrolamprus Erythrolamprus reginae
29306968 29306968 PRJEB36940_P_NODE_7849_length_309_cov_1.008475_g7720_i0 PRJEB36940 7849 309 1.008475 3.11618775 Xenopus laevis 8355 Chordata Chordata 62.8 6.87e-9   NR OCT76648.1 8355 g7720 i0 31.1 13.8932038834951 103 71 100 0 309 1 163 265 OCT76648.1 hypothetical protein XELAEV_18031852mg [Xenopus laevis] diamond 4293 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
29496456 29496456 PRJEB36940_P_NODE_14470_length_246_cov_0.901734_g14341_i0 PRJEB36940 14470 246 0.901734 2.21826564 Hyperolius riggenbachi 752182 Chordata Chordata 48.1 2.74e-4   NR XP_068120208.1 752182 g14341 i0 51.1 0.548780487804878 45 20 54.9 1 107 241 16 58 XP_068120208.1 ADP-ribosylation factor-like protein 11 [Hyperolius riggenbachi] diamond 135 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
29528116 29528116 PRJEB36940_P_NODE_14290_length_246_cov_2.520231_g14161_i0 PRJEB36940 14290 246 2.520231 6.19976826 Polypterus senegalus 55291 Chordata Chordata 95.9 5.33e-23   NR XP_039600843.1 55291 g14161 i0 64.3 6.82926829268293 70 24 85.4 1 33 242 1 69 XP_039600843.1 superoxide dismutase [Cu-Zn] [Polypterus senegalus] diamond 1680 95.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29710544 29710544 PRJEB36940_P_NODE_13830_length_248_cov_0.885714_g13701_i0 PRJEB36940 13830 248 0.885714 2.19657072 Chordata 7711 Chordata Chordata 51.2 4.18e-5   NR XP_054543897.1 50954 g13701 i0 34.6 9.93145161290323 78 48 91.9 2 3 230 5 81 XP_054543897.1 sperm flagellar protein 2 isoform X4 [Talpa occidentalis] diamond 2463 51.6 0.992248062015504 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Talpidae Talpa Talpa occidentalis
30026884 30026884 PRJEB36940_P_NODE_14651_length_245_cov_1.761628_g14522_i0 PRJEB36940 14651 245 1.761628 4.3159886 Mammalia 40674 Chordata Chordata 57.8 1.89e-7   NR XP_032984733.1 59479 g14522 i0 43.5 2.52244897959184 69 39 84.5 0 208 2 364 432 XP_032984733.1 tubby-related protein 2 [Rhinolophus ferrumequinum] diamond 618 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Rhinolophidae Rhinolophus Rhinolophus ferrumequinum
30121413 30121413 PRJEB36940_P_NODE_6532_length_337_cov_1.458333_g6403_i0 PRJEB36940 6532 337 1.458333 4.91458221 Chordata 7711 Chordata Chordata 83.2 2.58e-16   NR XP_041046751.1 13397 g6403 i0 46.4 21.213649851632 112 54 97 3 11 337 11 119 XP_041046751.1 dipeptidase 2 isoform X2 [Carcharodon carcharias] diamond 7149 83.6 0.995215311004785 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Lamniformes Alopiidae Carcharodon Carcharodon carcharias
30286520 30286520 PRJEB36940_P_NODE_4672_length_395_cov_1.590062_g4543_i0 PRJEB36940 4672 395 1.590062 6.2807449 Branchiostoma floridae 7739 Chordata Chordata 103 1.53e-22   NR XP_035669427.1 7739 g4543 i0 48.6 0.827848101265823 109 48 76.7 2 5 307 1027 1135 XP_035669427.1 uncharacterized protein LOC118411324 isoform X1 [Branchiostoma floridae] diamond 327 103 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
30911579 30911579 PRJEB36940_P_NODE_5954_length_352_cov_1.537634_g5825_i0 PRJEB36940 5954 352 1.537634 5.41247168 root 1 Root_unresolved Root_unresolved 62.4 1e-8   NR XP_040278274.1 8384 g5825 i0 36.8 5.24147727272727 106 61 86.1 2 35 337 12 116 XP_040278274.1 aquaporin-5-like [Bufo bufo] diamond 1845 62.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo bufo
31100874 31100874 PRJEB36940_P_NODE_11415_length_261_cov_1.388298_g11286_i0 PRJEB36940 11415 261 1.388298 3.62345778 root 1 Root_unresolved Root_unresolved 49.3 2.01e-4   NR CBY19703.1 34765 g11286 i0 65.6 0.850574712643678 32 11 36.8 0 106 11 37 68 CBY19703.1 unnamed protein product [Oikopleura dioica] diamond 222 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
31487240 31487240 PRJEB36940_P_NODE_15196_length_244_cov_0.906433_g15067_i0 PRJEB36940 15196 244 0.906433 2.21169652 Rana temporaria 8407 Chordata Chordata 58.5 9.79e-8   NR XP_040202520.1 8407 g15067 i0 52.2 4.32786885245902 69 28 79.9 2 2 196 166 233 XP_040202520.1 coiled-coil domain-containing protein 130 [Rana temporaria] diamond 1056 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
31701872 31701872 PRJEB36940_P_NODE_13057_length_250_cov_0.881356_g12928_i0 PRJEB36940 13057 250 0.881356 2.20339 Anura 8342 Chordata Chordata 60.8 1.63e-8   NR CAK8627389.1 30338 g12928 i0 37.3 2.964 83 43 99.6 2 249 1 112 185 CAK8627389.1 Dipeptidyl peptidase 1, partial [Bufotes viridis] diamond 741 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
31834784 31834784 PRJEB36940_P_NODE_7997_length_306_cov_1.356223_g7868_i0 PRJEB36940 7997 306 1.356223 4.15004238 Rhinatrema bivittatum 194408 Chordata Chordata 61.2 2.35e-8   NR XP_029456883.1 194408 g7868 i0 43 0.843137254901961 86 45 84.3 1 260 3 64 145 XP_029456883.1 26S proteasome non-ATPase regulatory subunit 6 isoform X1 [Rhinatrema bivittatum] diamond 258 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Rhinatrematidae Rhinatrema Rhinatrema bivittatum
32113236 32113236 PRJEB36940_P_NODE_3218_length_474_cov_2.660848_g3090_i0 PRJEB36940 3218 474 2.660848 12.61241952 Aves 8782 Chordata Chordata 151 1.38e-39   NR XP_010226800.1 94827 g3090 i0 49.4 9.9873417721519 158 78 98.7 1 5 472 307 464 XP_010226800.1 PREDICTED: thioredoxin reductase 2, mitochondrial [Tinamus guttatus] diamond 4734 151 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus
32681826 32681826 PRJEB36940_P_NODE_3960_length_429_cov_2.174157_g3831_i0 PRJEB36940 3960 429 2.174157 9.32713353 Metazoa 33208 Chordata Chordata 124 5.16e-30   NR XP_040194779.1 8407 g3831 i0 69.2 4.44055944055944 91 27 62.9 1 1 270 432 522 XP_040194779.1 succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial [Rana temporaria] diamond 1905 125 0.992 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
32681827 32681827 PRJEB36940_P_NODE_4920_length_385_cov_1.221154_g4791_i0 PRJEB36940 4920 385 1.221154 4.7014429 Anura 8342 Chordata Chordata 81.6 2.38e-16   NR XP_041428525.1 8355 g4791 i0 43.2 10.1766233766234 88 44 65.5 2 385 134 60 145 XP_041428525.1 heat shock factor protein 3-like [Xenopus laevis] diamond 3918 82.4 0.990291262135922 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
32902379 32902379 PRJEB36940_P_NODE_16020_length_242_cov_0.905325_g15891_i0 PRJEB36940 16020 242 0.905325 2.1908865 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 127 5.6e-32   NR XP_010723612.2 9103 g15891 i0 70 60.2727272727273 80 24 99.2 0 1 240 421 500 XP_010723612.2 threonine--tRNA ligase 1, cytoplasmic [Meleagris gallopavo] diamond 14586 128 0.9921875 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;